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mitohifi website  

MitoHiFi is a python workflow that assembles mitogenomes from Pacbio HiFi reads.

Environment Modules

Run module spider mitohifi to find out what environment modules are available for this application.

System Variables

  • HPC_SINGULARITY_IMAGE - singularity image


If you publish research that uses mitohifi you have to cite it as follows:

When using MitoHifi, please cite their Zenodo:

DOI: 10.5281/zenodo.5205678

And please cite MitoFinder:

Allio, R, Schomaker‐Bastos, A, Romiguier, J, Prosdocimi, F, Nabholz, B, Delsuc, F. MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics. Mol Ecol Resour. 2020; 00: 1– 14.

For tRNAs annotation:

Laslett, D., & Canbäck, B. (2008). ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics, 24(2), 172-175.