Hifiasm is a fast haplotype-resolved de novo assembler for PacBio Hifi reads. It can assemble a human genome in several hours and works with the California redwood genome, one of the most complex genomes sequenced so far. Hifiasm can produce primary/alternate assemblies of quality competitive with the best assemblers. It also introduces a new graph binning algorithm and achieves the best haplotype-resolved assembly given trio data.
module spider hifiasm to find out what environment modules are available for this application.
- HPC_HIFIASM_DIR - installation directory
- HPC_HIFIASM_BIN - executable directory