NOVOPlasty

Description

novoplasty website  

NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.

Environment Modules

Run module spider novoplasty to find out what environment modules are available for this application.

System Variables

• HPC_NOVOPLASTY_DIR - installation directory
• HPC_NOVOPLASTY_BIN - executable directory
• HPC_NOVOPLASTY_DOC - documentation directory
• HPC_NOVOPLASTY_EXE - example directory
• HPC_NOVOPLASTY_CONF - config directory
• HPC_NOVOPLASTY_CIRC - circos directory

Citation

If you publish research that uses novoplasty you have to cite it as follows:

Dierckxsens N., Mardulyn P. and Smits G. (2016) NOVOPlasty: De novo assembly of organelle genomes from whole genome data. Nucleic Acids Research, doi: 10.1093/nar/gkw955