GTDBTk
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Description
GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. It is computationally efficient and designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes.
Environment Modules
Run module spider gtdbtk to find out what environment modules are available for this application.
System Variables
- HPC_GTDBTK_DIR - installation directory
- HPC_GTDBTK_BIN - executable directory
- GTDBTK_DATA_PATH - reference database
Citation
If you publish research that uses gtdbtk you have to cite it as follows:
https://github.com/Ecogenomics/GtdbTk#references