Isonclust2
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Description
isONclust2 is a tool for clustering long transcriptomic reads into gene families. The tool is based on the approach pioneered by isONclust, using minimizers and occasional pairwise alignment.
isONclust2 is implemented in C++, which makes it fast enough to cluster large transcriptomic datasets produced on PromethION P24 and P48 devices. The tool is not a re-implementation of the original isONclust approach, as it deals with the strandedness of the reads and provides further optional features.
Environment Modules
Run module spider isonclust2 to find out what environment modules are available for this application.
System Variables
- HPC_ISONCLUST2_DIR - installation directory