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BatMeth2 website  

BatMeth2 is an easy-to-use, auto-run package for DNA methylation analyses. In order to complete the DNA methylation data analysis more conveniently, we packaged all the functions to complete an easy-to-use, auto-run package for DNA methylation analysis. During the execution of BatMeth2 Tool, an html report is generated about statistics of the sample.

Environment Modules

Run module spider BatMeth2 to find out what environment modules are available for this application.

System Variables

  • HPC_BATMETH2_DIR - installation directory
  • HPC_BATMETH2_BIN - executable directory


If you publish research that uses BatMeth2 you have to cite it as follows:

[Zhou Q, Lim J-Q, Sung W-K, Li G: An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping. BMC Bioinformatics 2019, 20:47.](