zUMIs is a fast and flexible pipeline to process RNA-seq data with (or without) UMIs.
The input to this pipeline is simply fastq files. In the most common cases, you will have a read containing the cDNA sequence and other read(s) containing UMI and Cell Barcode information. Furthermore, you will need a STAR index for your genome and GTF annotation file.
module spider zumis to find out what environment modules are available for this application.
- HPC_ZUMIS_DIR - installation directory
- HPC_ZUMIS_BIN - executable directory