Search results

Assemblytics
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 17:02, 29 September 2020
TEMP
[[Category:Software]][[Category:Phylogenetics]] TEMP is a software package for detecting transposable elements (TEs) insertions and absences f

2 KB (270 words) - 21:29, 6 December 2019
Brewery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:40, 24 January 2020
GenomeScope2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 22:07, 15 March 2022
Oases
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (293 words) - 17:25, 19 August 2022
Category:Structure
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:32, 6 June 2022
DCC
[[Category:Software]][[Category:biology]][[Category:NGS]]

2 KB (236 words) - 18:45, 12 August 2022
OneFormer
[[Category:Software]][[Category:Imaging]][[Category:Image Processing]][[Category:AI]]

2 KB (246 words) - 14:25, 7 April 2023
HOOMD
[[Category:Software]][[Category:Library]][[Category:Math]]

5 KB (607 words) - 15:40, 6 June 2022
Doxygen
[[Category:Software]][[Category:Programming]][[Category:Documentation]] This module enables the use of the Doxygen software

3 KB (406 words) - 14:47, 15 August 2022
Counterr
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:15, 6 December 2019
Elastix
[[Category:Software]][[Category:Phylogenetics]] ...on the well-known Insight Segmentation and Registration Toolkit (ITK). The software consists of a collection of algorithms that are commonly used to solve (med

3 KB (365 words) - 15:30, 3 June 2022
Sniffles2
[[Category:Software]]

2 KB (291 words) - 20:42, 12 August 2022
GenomicTools
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:ChIP-Seq]][[Category:RNA-Se

3 KB (385 words) - 18:58, 12 August 2022
RNAstructure
[[Category:Software]]

3 KB (359 words) - 21:58, 21 August 2022
Program Database Toolkit
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Performance Analys uniform way through a class library supporting common PDB operations. Software

3 KB (370 words) - 14:38, 18 October 2022
PanX
[[Category:Software]][[Category:Phylogenetics]] panX is a software package for pan-genome analysis, interactive visualization and exploration.

3 KB (346 words) - 21:22, 6 December 2019
DecontaMiner
[[Category:Software]]

3 KB (321 words) - 14:56, 2 March 2021
GRASS
[[Category:Software]][[Category:Geospatial]] ...ort System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, g

5 KB (593 words) - 21:27, 14 December 2022
ASTRAL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

3 KB (415 words) - 15:08, 12 August 2022
Gimmemotifs
[[Category:Software]]

2 KB (293 words) - 15:41, 30 June 2023
Graph-tool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 17:20, 15 August 2022
Bwa-mem2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (361 words) - 16:11, 27 May 2022
InParanoid
[[Category:Software]][[Category:Biology]]

2 KB (236 words) - 19:20, 12 August 2022
Neovim
[[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]

3 KB (327 words) - 20:24, 2 February 2024
SQANTI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 21:24, 6 December 2019
ResFinder
[[Category:Software]]

3 KB (342 words) - 18:41, 23 April 2021
RiboPicker
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (377 words) - 21:50, 21 August 2022
Parallel
[[Category:Software]][[Category:Shell]][[Category:Workflow Automation]] |{{#vardefine:url|http://www.gnu.org/software/parallel/}}

3 KB (334 words) - 16:46, 21 August 2022
PosiGene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:22, 6 December 2019
Finder
[[Category:Software]] independent software that generatess gene annotations in GTF format. finder

3 KB (345 words) - 16:42, 15 August 2022
Category:Alignment
[[Category:Biology]][[Category:Software]]

24 members (0 subcategories, 0 files) - 15:24, 23 August 2022
Deepcoil
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (241 words) - 18:49, 12 August 2022
YASRA
[[Category:Software]] [[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (304 words) - 20:56, 12 August 2022
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
HOMER
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (330 words) - 18:19, 15 August 2022
COMSOL
[[Category:Software]][[Category:Simulation]] COMSOL Multiphysics® is a general-purpose simulation software for modeling designs, devices, and processes in all fields of engineering,

3 KB (426 words) - 19:40, 20 February 2024
Pbpigeon
[[Category:Software]][Category:Biology]]

2 KB (275 words) - 22:37, 21 January 2024
MCR
[[Category:Software]][[Category:Math]][[Category:Language]] ...TLAB Runtime enable you to create and distribute numerical applications or software components quickly and securely.

2 KB (292 words) - 18:06, 3 June 2022
ASHS
[[Category:Software]][[Category:Biology]][[Category:imaging]] ASHS is a software package for automatic segmentation of hippocampal subfields in MRI scans. A

3 KB (353 words) - 20:32, 24 August 2022
Freecad
[[Category:Software]][[Category:Modeling]]

2 KB (241 words) - 00:16, 15 February 2023
Maker
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.yandell-lab.org/software/maker.html}}

3 KB (387 words) - 18:20, 18 August 2022
Synima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (313 words) - 20:34, 27 May 2022
Gapseq
[[Category:Software]][[Category:Chemistry]][[Category:Biology]]

2 KB (252 words) - 14:22, 11 October 2022
MentaLiST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (368 words) - 18:51, 10 June 2022
SST-Core Install
[[SST-Core|Back to SST-Core page]][[Category:Software]]

1 KB (195 words) - 14:50, 16 August 2017
GCT
[[Category:Software]][[Category:File Management]][[Category:Utility]] The GCT is a nascent effort to provide community-based support for critical software packages for grid computing. The GCT is based on a fork of the Globus Toolk

2 KB (290 words) - 13:54, 21 October 2022
Mega2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
Fusion twas
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:27, 26 May 2022
GLMsingle
[[Category:Software]][[Category:imaging]]

2 KB (291 words) - 20:33, 24 August 2022
Consed
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (348 words) - 18:39, 12 August 2022
BAPS
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BAPS/}}

3 KB (313 words) - 18:07, 12 August 2022
Valouev
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (252 words) - 21:29, 6 December 2019
Piranha
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/piranha/}}

2 KB (266 words) - 16:02, 10 June 2022
SparCC
[[Category:Software]][[Category:Biology]] |{{#vardefine:exe|}} 

2 KB (264 words) - 15:47, 22 August 2022
Wub
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] Tools and software library developed by the ONT Applications group

2 KB (250 words) - 17:46, 22 August 2022
MinPath
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (317 words) - 21:22, 6 December 2019
Workbench
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (286 words) - 15:34, 19 August 2022
SQANTI3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 20:35, 27 May 2022
SpliceTrap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (347 words) - 20:44, 12 August 2022
SNPhylo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (340 words) - 17:48, 10 June 2022
MNEtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 16:13, 6 June 2022
Samba Access
...:''' There is a known issue with the CIFS client in Mac Finder. The Finder software in current version of MacOS does not have a refresh button to update conten

5 KB (816 words) - 17:31, 31 August 2023
Delft3D
[[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} 

3 KB (398 words) - 13:35, 17 April 2024
MRIcroGL
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (294 words) - 20:33, 24 August 2022
BlobTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:15, 6 December 2019
Nccl
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:GPU]]

3 KB (293 words) - 20:03, 21 August 2022
Triobinning
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (276 words) - 13:31, 15 August 2022
APT
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (340 words) - 14:32, 12 August 2022
Kallisto
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (278 words) - 16:13, 10 June 2022
RepeatAnalysis
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (238 words) - 14:34, 26 August 2020
SortMeRNA
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (299 words) - 17:00, 10 June 2022
MCarts
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (399 words) - 14:53, 14 December 2022
Cyvcf2
[[Category:Software]]

2 KB (260 words) - 14:47, 28 July 2023
VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 15:53, 21 June 2023
YAK
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:10, 10 March 2021
Cx oracle
[[Category:Software]][[Category:Database]][[Category:Utility]]

2 KB (269 words) - 14:22, 15 August 2022
Jq
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
NxTrim
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.

2 KB (273 words) - 20:08, 12 August 2022
Leafaudio
[[Category:Software]][[Category:Audio]][[Category:Machine Learning]]

2 KB (288 words) - 19:49, 15 August 2022
UNCALLED
[[Category:Software]]

2 KB (281 words) - 20:53, 12 August 2022
Localizer
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:18, 26 May 2022
Ncview
[[Category:Software]][[Category:Visualization]] |{{#vardefine:exe|}} 

2 KB (317 words) - 14:42, 19 August 2022
QuartetScores
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 14:50, 27 April 2020
Mdanalysis
[[Category:Software]][[Category:Biology]][[Category:Physics]]

3 KB (387 words) - 19:49, 12 August 2022
Plink
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (342 words) - 20:25, 12 August 2022
RTGTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 15:06, 10 June 2022
OPENACC
[[Category:Software]][[Category:Programming]]

2 KB (291 words) - 12:01, 26 August 2022
RDnaTools
[[Category:Software]][[Category:Phylogenetics]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (361 words) - 21:24, 6 December 2019
IsoSel
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://doua.prabi.fr/software/isosel}}

3 KB (345 words) - 14:29, 26 March 2021
Authentication With MFA
...ntually, multiple failures of the password login will lead to our security software blocking your client due to too many incorrect password attempts, and event

6 KB (1,008 words) - 21:10, 14 July 2023
MELTING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the

3 KB (306 words) - 19:50, 12 August 2022
CPAT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:34, 10 June 2022
FastQTL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 14:40, 22 July 2020
EvoLSTM
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 18:52, 12 August 2022
HPL
[[Category:Software]][[Category:Programming]][[Category:Performance Analysis]]

2 KB (255 words) - 12:01, 26 August 2022
MitoFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:23, 6 December 2019
Kma
[[Category:Software]][[Category:Library]][[Category:Data Science]]

2 KB (292 words) - 15:51, 30 January 2023
INLA
[[Category:Software]][[Category:statistics]][[Category:modeling]][[Category:Programming]]

2 KB (236 words) - 12:20, 26 August 2022
WoLFPSort
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 21:29, 6 December 2019
Funannotate
[[Category:Software]][[Category:Phylogenetics]] ...t has evolved over time to accomodate larger genomes. The impetus for this software package was to be able to accurately and easily annotate a genome for submi

3 KB (375 words) - 16:51, 15 August 2022
Cutadapt
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (263 words) - 18:44, 12 August 2022
SOAPsplice
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (315 words) - 00:06, 22 August 2022
WGS Assembler
[[Category:Software]][[Category:biology]][[Category:genomics]] Celera Assembler : scientific software for biological research. Celera Assembler is a de novo whole-genome shotgun

3 KB (359 words) - 20:56, 12 August 2022
BayesR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (253 words) - 15:01, 10 June 2022
Mfold
[[Category:Software]][[Category:Biology]][[Category:Structure]]

2 KB (277 words) - 19:51, 12 August 2022
DeFusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:22, 26 August 2020
Hiphase
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (337 words) - 20:21, 19 March 2024
METIS
[[Category:Software]][[Category:Utility]]

2 KB (247 words) - 19:40, 18 August 2022
Moses
[[Category:Software]]

3 KB (381 words) - 15:15, 17 October 2022
Fastchaos
[[Category:Software]][[Category:Sequencing]]

2 KB (243 words) - 14:57, 29 July 2022
UCSC
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (349 words) - 20:53, 12 August 2022
Xapian
[[Category:Software]][[Category:Library]]

2 KB (265 words) - 15:42, 10 June 2022
Category:Workflow Automation
[[Category:Software]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
SST-Core
[[Category:Software]][[Category:Simulation]]

3 KB (324 words) - 21:24, 6 December 2019
Scapp
[[Category:Software]][[Category:Genomics]][[Category:Assembly]]

2 KB (267 words) - 20:57, 10 August 2023
GSEA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...://www.pnas.org/content/102/43/15545.abstract To cite your use of the GSEA software, a joint project of UC San Diego and Broad Institute, please reference Subr

2 KB (298 words) - 17:27, 15 August 2022
Mugsy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (298 words) - 21:22, 6 December 2019
SMR
[[Category:Software]] |{{#vardefine:url|https://cnsgenomics.com/software/smr/#Overview}}

3 KB (362 words) - 18:27, 19 August 2021
IVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (300 words) - 16:06, 7 December 2021
Proteinortho
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/proteinortho/index.html}}

2 KB (302 words) - 20:27, 12 August 2022
SEPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (313 words) - 20:39, 12 August 2022
TGICL
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://compbio.dfci.harvard.edu/tgi/software/}}

3 KB (340 words) - 20:47, 12 August 2022
UKFractography
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 20:13, 1 June 2022
TPP
[[Category:Software]][[Category:Biology]][[Category:Chemistry]][[Category:spectroscopy]]

2 KB (266 words) - 20:22, 24 August 2022
Mantis
[[Category:Software]][[Category:Phylogenetics]]

3 KB (368 words) - 17:20, 27 May 2022
Mosdepth
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:23, 6 December 2019
NetCDF-F
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.unidata.ucar.edu/software/netcdf/}}

2 KB (269 words) - 16:36, 2 September 2022
SHAPEIT4
[[Category:Software]]

5 KB (617 words) - 19:22, 14 December 2022
S.A.G.E
[[Category:Software]][[Category:Phylogenetics]] is a free software package containing programs for use in the genetic analysis of family, pedi

2 KB (277 words) - 15:17, 10 September 2021
Face recognition
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 14:56, 3 June 2022
SAMStat
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (429 words) - 20:34, 12 August 2022
CLARK
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (271 words) - 16:28, 10 June 2022
CONCOCT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...change significantly from one version to another. If you want to use this software, please stay up to date with the list of known issues: [https://github.com/

3 KB (308 words) - 18:39, 12 August 2022
AnnoTALE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:15, 17 September 2020
Wtdbg
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 17:44, 22 August 2022
AlphaMate
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software-2/alphamate/}}

3 KB (338 words) - 13:46, 9 May 2023
Metabolic
[[Category:Software]] This software enables the prediction of metabolic and biogeochemical functional trait pro

3 KB (304 words) - 19:26, 18 August 2022
TetGen
[[Category:Software]][[Category:Modeling]] |{{#vardefine:url|http://wias-berlin.de/software/tetgen}}

2 KB (253 words) - 16:28, 22 August 2022
OTB
[[Category:Software]][[Category:Geospatial]]

3 KB (311 words) - 17:27, 10 June 2022
BIOMART
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (310 words) - 18:16, 12 August 2022
BatMeth2
[[Category:Software]]

3 KB (324 words) - 18:57, 17 September 2021
Seqtk
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (263 words) - 20:40, 12 August 2022
Apptainer
[[Category:Software]][[Category:Workflow Automation]] or even create a shell in the software environment provided by the container with

4 KB (609 words) - 16:30, 12 February 2024
NUPACK
[[Category:Software]][[Category:Phylogenetics]] NUPACK is a software suite for the analysis and design of nucleic acid structures, devices, and

2 KB (263 words) - 21:22, 6 December 2019
Nextstrain
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 14:56, 2 March 2020
Alienhunter
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (256 words) - 12:34, 12 August 2022
RADICAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://desalle.amnh.org/software.html}}

2 KB (295 words) - 21:28, 21 August 2022
SU2
[[Category:Software]][[Category:Phylogenetics]] ...tiphysics analysis and design optimization freely available as open-source software and involving everyone in its creation and development.

2 KB (278 words) - 18:50, 1 June 2022
Pipe-clip
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 21:22, 6 December 2019
Peneasy
[[Category:Software]]

4 KB (460 words) - 18:26, 27 May 2022
MAFFT
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://mafft.cbrc.jp/alignment/software/}}

2 KB (295 words) - 20:23, 15 August 2022
Minimap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (385 words) - 19:07, 10 June 2022
GHOST-MP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 20:11, 7 May 2020
Snp2hla
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|https://software.broadinstitute.org/mpg/snp2hla/}}

3 KB (379 words) - 20:42, 12 August 2022
OpenCL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 17:52, 19 August 2022
MotionCor2
[[Category:Software]][[Category:imaging]] |{{#vardefine:url|http://msg.ucsf.edu/em/software/index.html}}

3 KB (375 words) - 20:33, 24 August 2022
Gflags
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (291 words) - 17:07, 15 August 2022
HMM-FRAME
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
Mvrsion
[[Category:Software]][[Category:Sequencing]]

2 KB (246 words) - 14:24, 29 November 2022
CAP3
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (302 words) - 13:19, 15 August 2022
Giotto
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 19:31, 26 May 2022
DSK
[[Category:Software]][[Category:Biology]][[Category:NGS]] DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory

3 KB (315 words) - 17:17, 10 June 2022
RagTag
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 15:27, 13 August 2020
Conpair
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 17:29, 10 June 2022
Category:Imaging
[[Category:Software]]

46 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Braker
[[Category:Software]][[Category:Phylogenetics]] https://github.com/Gaius-Augustus/BRAKER#citing-braker-and-software-called-by-braker

2 KB (261 words) - 22:28, 26 August 2020
Dynasor
[[Category:Software]][[Category:Molecular_Dynamics]]

3 KB (416 words) - 16:47, 27 November 2023
Ltr finder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (416 words) - 20:21, 15 August 2022
Autometa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (300 words) - 21:19, 6 December 2019
Pvconv
[[Category:Software]]

2 KB (265 words) - 21:12, 24 October 2022
Category:Genomics
[[Category:Biology]][[Category:Software]] Genomics Software

346 members (0 subcategories, 0 files) - 15:26, 23 August 2022
GenSel
[[Category:Software]][[Category:Genomics]]

2 KB (271 words) - 17:03, 15 August 2022
V-Phaser
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (390 words) - 20:07, 27 May 2022
TEToolkit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (259 words) - 20:46, 12 August 2022
DNA Clust
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (252 words) - 18:50, 12 August 2022
Embree
[[Category:Software]][[Category:Graphics]]

3 KB (343 words) - 15:01, 15 August 2022
Vfuparr
[[Category:Software]][[Category:Sequencing]][[Category:Biology]] ...LURM systems, this workflow allows users to easily incorporate any docking software of their choice, ensuring maximum flexibility.

3 KB (392 words) - 20:35, 9 April 2024
Arcashla
[[Category:Software]]

2 KB (250 words) - 19:33, 24 July 2023
Vibrant
[[Category:Software]][[Category:Genomics]]

3 KB (333 words) - 17:36, 15 August 2022
Vermouth-martinize
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:21, 1 November 2021
Nsightsys
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

2 KB (278 words) - 20:39, 24 August 2022
Bridger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (341 words) - 13:14, 15 August 2022
Svtyper
[[Category:Software]]

3 KB (360 words) - 14:04, 3 October 2022
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
Galaxy Upgrade Highlights
[[Category:Software]][[Category:Galaxy]]

3 KB (417 words) - 20:34, 18 April 2018
XWAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (383 words) - 13:27, 31 August 2020
Necklace
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ovo assembly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resultin

3 KB (312 words) - 21:22, 6 December 2019
Processing
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Visualization]] ...within the context of the visual arts. Since 2001, Processing has promoted software literacy within the visual arts and visual literacy within technology. Ther

2 KB (285 words) - 12:12, 26 August 2022
Nanocomp
[[Category:Software]][[Category:programming]][[Category:sequencing]]

2 KB (282 words) - 12:22, 26 August 2022
ClustalW
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (265 words) - 18:37, 12 August 2022
Mach2VCF
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 14:49, 10 June 2022
SpliceGrapher
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (318 words) - 21:24, 6 December 2019
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
FastTree
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (388 words) - 16:39, 15 August 2022
Metilene
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|https://www.bioinf.uni-leipzig.de/Software/metilene/}}

3 KB (375 words) - 19:39, 18 August 2022
AfterQC
[[Category:Software]][[Category:Phylogenetics]]

3 KB (341 words) - 21:19, 6 December 2019
Storage
...ng data files in any analyses run on HiPerGator. It is permissible to keep software builds, conda environments, text documents, and valuable scripts in $HOME a

12 KB (2,046 words) - 15:26, 13 July 2023
Haphpipe
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (405 words) - 16:40, 14 March 2023
HaMStR
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (420 words) - 20:09, 12 August 2022
Category:Data Mining
[[Category:Data]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:25, 23 August 2022
Pycoqc
[[Category:Software]] ...ive quality control for Oxford Nanopore Sequencing. Journal of Open Source Software, 4(34), 1236, https://doi.org/10.21105/joss.01236

3 KB (309 words) - 13:55, 21 October 2022
RACA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (235 words) - 19:45, 10 June 2022
GATE
[[Category:Software]][[Category:Library]]

2 KB (264 words) - 19:51, 10 June 2022
Pysamstats
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 19:52, 29 September 2020
Ufraw
[[Category:Software]][[Category:Data Mining]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (316 words) - 14:45, 6 June 2022
Qupath
[[Category:Software]][[Category:Biology]][[Category:Imaging]] Bankhead, P. et al. QuPath: Open source software for digital pathology image analysis. Scientific Reports (2017).

2 KB (290 words) - 17:50, 11 April 2023
Sc-im
[[Category:Software]][[Category:Visualization]][[Category:Utility]]

2 KB (272 words) - 22:07, 21 August 2022
FragGeneScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (232 words) - 16:48, 15 August 2022
DeSALT
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

3 KB (350 words) - 14:38, 15 August 2022
CNV-Seq
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (245 words) - 13:50, 15 August 2022
ReCOGnizer
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 17:03, 3 December 2020
AMAS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 12:38, 12 August 2022
EEGLAB
[[Category:Software]][[Category:Biology]][[Category:Biology]]

2 KB (271 words) - 14:56, 15 August 2022
Flappie
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:20, 6 December 2019
SOAPnuke
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:12, 6 April 2020
Dragonflye
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]] https://github.com/rpetit3/dragonflye#software-included-19

2 KB (283 words) - 20:18, 12 April 2022
MASS
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b

2 KB (269 words) - 19:02, 10 October 2022
QGIS
[[Category:Software]][[Category:Geospatial]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (288 words) - 20:27, 24 August 2022
Pdb2pqr
[[Category:Software]][[Category:Biology]][[Category:modeling]]

3 KB (336 words) - 17:51, 15 August 2022
SMRT-SV
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (340 words) - 00:03, 22 August 2022
Merge peaks
[[Category:Software]][[Category:Workflow Automation]]

2 KB (254 words) - 18:51, 15 August 2022
Rebaler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 18:00, 1 June 2022
KING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] [http://people.virginia.edu/~wc9c/KING/manual.html Software Manual in HTML format]

3 KB (305 words) - 19:28, 12 August 2022
Crest
[[Category:Software]]

3 KB (320 words) - 16:16, 24 April 2023
MSMC-Tools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 19:12, 9 June 2020
CAMP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (255 words) - 18:00, 23 May 2022
Bracken
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://ccb.jhu.edu/software/bracken/}}

3 KB (402 words) - 19:01, 10 June 2022
Ncftp
[[Category:Software]][[Category:File Management]]

2 KB (256 words) - 13:54, 21 October 2022
Seqwish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (347 words) - 21:24, 6 December 2019
DECX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 17:54, 26 April 2021
SOAPdenovo
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (314 words) - 00:05, 22 August 2022
DSSAT
[[Category:Software]] is a software application program that comprises crop simulation

3 KB (371 words) - 14:52, 15 August 2022
MAnorm
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (370 words) - 14:07, 27 May 2022
NextDenovo
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 18:03, 10 May 2021
PHYling
[[Category:Software]]

3 KB (375 words) - 18:17, 3 June 2022
Pandaseq
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (239 words) - 18:08, 19 August 2022
XZ
[[Category:Software]][[Category:compression]][[Category:library]] XZ Utils is free general-purpose data compression software with a high compression ratio. XZ Utils were written for POSIX-like systems

2 KB (287 words) - 14:19, 27 May 2022
Prodigal
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (237 words) - 14:37, 10 June 2022
Mauve
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (448 words) - 19:49, 12 August 2022
Concaterpillar
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 22:10, 26 August 2020
Rnaeditingindexer
[[Category:Software]][[Category:Biology]]

2 KB (239 words) - 22:53, 21 January 2024
MountainSort
[[Category:Software]][[Category:Library]] MountainSort (a component of MountainLab) is spike sorting software developed by Jeremy Magland, Alex Barnett, and Leslie Greengard at the Cent

3 KB (309 words) - 21:22, 6 December 2019
Spruceup
[[Category:Software]][[Category:Phylogenetics]] ...quence blocks (alignment columns) commonly addressed by alignment trimming software.

3 KB (317 words) - 21:24, 6 December 2019
RepeatAnalysisTools
[[Category:Software]] @software{tange_2021_5013933,

4 KB (430 words) - 16:55, 15 December 2022
Category:Modeling
[[Category:Software]] Modeling software

20 members (0 subcategories, 0 files) - 22:21, 29 February 2012
FALCON
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (395 words) - 15:19, 15 August 2022
VDJtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:29, 6 December 2019
MrBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (314 words) - 12:28, 19 August 2022
Fluent
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (266 words) - 16:46, 15 August 2022
GDSL
[[Category:Software]][[Category:Library]]

3 KB (305 words) - 15:37, 6 June 2022
HALC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:20, 6 December 2019
ScGPT
[[Category:Software]]

2 KB (258 words) - 16:01, 7 August 2023
Conefor
[[Category:Software]][[Category:Biology]] Conefor is a software package that allows quantifying the importance of habitat areas and links f

3 KB (303 words) - 14:33, 2 May 2023
InterProScan
[[Category:Software]][[Category:Biology]] This interproscan software allows you to query your sequence against the InterPro databases.

3 KB (334 words) - 19:23, 12 August 2022
GDAL
[[Category:Software]][[Category:Geospatial]][[Category:Library]]

3 KB (313 words) - 18:21, 8 July 2022
USEARCH
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

4 KB (559 words) - 17:19, 22 August 2022
Category:Audio
[[Category:Software]]

3 members (0 subcategories, 0 files) - 17:20, 3 June 2022
FcGENE
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]][[Category:Genomics]]

3 KB (326 words) - 16:38, 15 August 2022
Weka
[[Category:Software]][[Category:Machine Learning]][[Category:Statistics]] Weka is tried and tested open source machine learning software that can be accessed through a graphical user interface, standard terminal

3 KB (304 words) - 16:07, 6 June 2022
Dammit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ..., the existing solutions are overly complicated or rely on crappy non-free software.

2 KB (279 words) - 21:20, 6 December 2019
Checkv
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (278 words) - 13:58, 18 October 2022
VirSieve
[[Category:Software]] [[Category:Software]]

5 KB (639 words) - 18:59, 14 December 2022
Development and Testing
...a SLURM partition (collection of hosts) for the purpose of supporting just software development. Jobs in this partition are not subject to a user's normal [[A

5 KB (842 words) - 17:26, 8 March 2023
ASTRID
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 15:16, 12 August 2022
SHARCGS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:De Novo]]

3 KB (313 words) - 22:42, 21 August 2022
Gzip
[[Category:Software]][[Category:Compression]] |{{#vardefine:url|https://www.gnu.org/software/gzip/}}

2 KB (252 words) - 18:11, 15 August 2022
Sailfish
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]][[Category:RNA-Se |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/sailfish/}}

4 KB (482 words) - 22:02, 21 August 2022
Mriqc
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (296 words) - 20:33, 24 August 2022
MiRanda
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 21:21, 6 December 2019
Alevin-fry
[[Category:Software]]

3 KB (320 words) - 18:28, 9 February 2023
Osprey
[[Category:Software]][[Category:Spectroscopy]][[Category:Neuroscience]] Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo

2 KB (280 words) - 18:01, 19 August 2022
Dorado
[[Category:Software]][[Category:Genomics]] In order to run the software, you may need to load the modules "cuda" and "pytorch". You may need to als

3 KB (335 words) - 16:04, 22 February 2024
SQL Developer
[[Category:Software]][[Category:Programming]][[Category:Database]] ...'<code>SQLDeveloper</code>' or '<code>sqldeveloper.sh</code>' to start the software.

3 KB (323 words) - 17:32, 15 August 2022
CAVIAR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 21:17, 6 December 2019
CLIPper
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 13:44, 15 August 2022
Yolov4 darknet
[[Category:Software]][[Category:Machine Learning]]

2 KB (244 words) - 19:21, 1 June 2022
PhyloFlash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 00:09, 29 October 2020
Software Development Policies
==External Software Components== ...d to get a security review or risk assessment for such software. Only when software is exposed to the outside world, e.g. as part of PubApps, will a security r

533 bytes (84 words) - 15:43, 19 August 2022
Odgi
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 14:11, 15 July 2021
Halla
[[Category:Software]][[Category:Phylogenetics]]

3 KB (367 words) - 13:57, 25 March 2022
Ipyrad
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:00, 15 August 2022
Virsorter
[[Category:Software]][[Category:Genomics]]

2 KB (261 words) - 21:12, 21 October 2022
EnTAP
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (236 words) - 21:20, 6 December 2019
Pangolin
[[Category:Software]][[Category:Phylogenetics]] Software package for assigning SARS-CoV-2 genome sequences to global lineages.

2 KB (249 words) - 15:38, 28 January 2021
Samtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (357 words) - 22:04, 21 August 2022
PBJelly
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (309 words) - 17:07, 21 August 2022
ABRicate
[[Category:Software]][[Category:Phylogenetics]] If you publish the results of Abricate please cite both the software and the appropriate database you used with --db

3 KB (314 words) - 17:27, 27 April 2020
Structure threader
[[Category:Software]] ...parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.

3 KB (342 words) - 18:56, 3 June 2022
Phanotate
[[Category:Software]][[Category:Genomics]]

2 KB (273 words) - 20:02, 8 November 2022
RDKit
[[Category:Software]][[Category:Chemistry]]

2 KB (235 words) - 21:35, 21 August 2022
NucleoATAC
[[Category:Software]][[Category:biology]]

2 KB (276 words) - 20:08, 12 August 2022
NGmerge
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:22, 6 December 2019
IVar
[[Category:Software]]

3 KB (335 words) - 18:36, 26 March 2021
Modules Basic Usage
...the latest or the default version of the module and be able to execute the software is 'module load <application>'. For instance, if the module is called '''nc ...spective branches. E.g., if you need to load the module for the "espresso" software that was built with MVAPICH2 support using Intel Compiler version 11.1 you

5 KB (745 words) - 16:07, 13 February 2023
UNAFold
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.

3 KB (359 words) - 20:53, 12 August 2022
PLEK
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:57, 10 June 2022
QTLtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 20:58, 21 August 2022
FastPlast
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 20:23, 23 May 2022
NANO
[[Category:Software]][[Category:Programming]]

3 KB (360 words) - 19:24, 29 November 2022
ART
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.niehs.nih.gov/research/resources/software/biostatistics/art/}}

3 KB (440 words) - 21:10, 6 December 2019
Mrtrix3tissue
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 16:51, 30 January 2023
Intel MPI
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]] |{{#vardefine:url|https://software.intel.com/en-us/intel-mpi-library}}

3 KB (297 words) - 12:01, 26 August 2022
Shasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (402 words) - 21:24, 6 December 2019
BERTopic
[[Category:Software]][[Category:Machine Learning]]

2 KB (283 words) - 14:00, 27 May 2022
HTSeq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (411 words) - 19:05, 12 August 2022
GeneTorrent
[[Category:Software]][[Category:Biology]][[Category:File Management]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF

3 KB (316 words) - 13:54, 21 October 2022
W2rap-contigger
[[Category:Software]][[Category:biology]][[Category:genomics]]

2 KB (246 words) - 21:29, 6 December 2019
Varnorm
[[Category:Software]][[Category:Biology]]

2 KB (251 words) - 17:23, 22 August 2022
Hecaton
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (277 words) - 18:57, 6 June 2022
ZUMIS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (302 words) - 17:55, 22 August 2022
Hificnv
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (292 words) - 20:23, 20 March 2024
MIGRATE-N
[[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:exe|1}} 

5 KB (636 words) - 16:05, 22 December 2022
Ctk
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (297 words) - 16:53, 10 October 2022
AI Examples
...les for computer vision and natural language processing tasks using the AI software stacks on HiPerGator. Users may copy these examples to their own space, add ...MultiNode MONAI] || distributed compute, computer vision || Use the MONAI software to train an image classifier on multiple nodes.

3 KB (367 words) - 18:50, 30 August 2022
CHARMM
[[Category:Software]][[Category:Chemistry]][[Category:Simulation]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 13:51, 6 June 2022
ANGSD
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.

3 KB (355 words) - 12:42, 12 August 2022
Category:Performance Analysis
[[Category:Software]]

10 members (0 subcategories, 0 files) - 19:52, 22 August 2022
Intel Compilers and Libraries
[[Category:Software]][[Category:Programming]][[Category:Language]][[Category:Library]][[Categor |{{#vardefine:url|https://software.intel.com/en-us/intel-parallel-studio-xe}}

5 KB (612 words) - 18:04, 27 September 2023
DDSCAT
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|}} 

2 KB (326 words) - 14:30, 15 August 2022
HELEN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 22:22, 27 August 2020
PyPHLAWD
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:24, 6 December 2019
GDrive
[[Category:Software]]

3 KB (400 words) - 20:03, 5 October 2023
TDNAscan
[[Category:Software]][[Category:Phylogenetics]] TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions

2 KB (278 words) - 18:28, 7 December 2021
SEQuel
[[Category:Software]][[Category:NGS]][[Category:Biology]]

3 KB (382 words) - 22:39, 21 August 2022
Scala
[[Category:Software]][[Category:Programming]][[Category:Language]] object-functional programming language for general software applications.

2 KB (293 words) - 12:12, 26 August 2022
Texlive
[[Category:Software]][[Category:Documentation]]

2 KB (267 words) - 16:34, 22 August 2022
IDL
[[Category:Software]][[Category:language]][[Category:programming]][[Category:Data Science]]

2 KB (245 words) - 18:40, 15 August 2022
Globus
[[Category:Software]][[Category:File Management]] ...h [https://www.globus.org/globus-connect-personal Globus Connect Personal] software they can use to set up a personal collection on their computing device (Win

11 KB (1,849 words) - 14:14, 31 January 2024
Mathematica
[[Category:Software]][[Category:Math]]

3 KB (315 words) - 22:21, 8 September 2020
MetaPhlAn2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (319 words) - 19:28, 2 June 2022
SRA-Human-Scrubber
[[Category:Software]]

3 KB (411 words) - 14:01, 27 May 2022
IMPUTE5
[[Category:Software]] |{{#vardefine:url|https://jmarchini.org/software/#impute-5}}

3 KB (351 words) - 18:49, 15 August 2022
SomaticSeq
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 00:06, 22 August 2022
EMAN2
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}

2 KB (258 words) - 15:00, 15 August 2022
SInC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (278 words) - 21:24, 6 December 2019
Sniffles
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 00:03, 22 August 2022
FLASh
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://ccb.jhu.edu/software/FLASH/}}

2 KB (297 words) - 16:44, 15 August 2022
AtomMan
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 14:16, 22 September 2020
NucDiff
[[Category:Software]][[Category:Phylogenetics]] ...ral.com/articles/10.1186/gb-2004-5-2-r12 Kurtz S et al. Versatile and open software for comparing large genomes. Genome Biol. 2004;5(2):R12. doi 10.1186/gb-200

3 KB (315 words) - 21:22, 6 December 2019
Ancestryhmm
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (291 words) - 21:25, 9 May 2023
Blink
[[Category:Software]][[Category:Genomics‏‎]]

2 KB (267 words) - 13:03, 15 August 2022
Tbprofiler
[[Category:Software]]

3 KB (312 words) - 21:31, 10 February 2023
R MPI Example
[[Category:Software]][[Category:Compiler]]

3 KB (399 words) - 17:37, 15 August 2022
BYOBU
[[Category:Software]][[Category:Shell]]

3 KB (313 words) - 19:50, 11 July 2022
Jasp
[[Category:Software]][[Category:Statistics]] JASP is a cross-platform software program which allows you to conduct statistical analyses in seconds, and wi

2 KB (289 words) - 16:14, 5 May 2022
Proovread
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (269 words) - 20:27, 12 August 2022
Hail
[[Category:Software]]

3 KB (353 words) - 17:42, 19 October 2021
Distruct
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:20, 6 December 2019
Circexplorer3
[[Category:Software]]

2 KB (271 words) - 15:06, 18 January 2023
Genmap
[[Category:Software]]

2 KB (256 words) - 21:20, 17 May 2023
Pbmm2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 20:08, 31 May 2022
IMOD
[[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (414 words) - 14:42, 14 December 2022
Gawk
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/gawk/}}

3 KB (356 words) - 16:55, 15 August 2022
Qctool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:12, 2 June 2022
RAxML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://wwwkramer.in.tum.de/exelixis/software.html}}

7 KB (1,050 words) - 21:31, 21 August 2022
ChromEvol
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (297 words) - 13:34, 15 August 2022
Subphaser
[[Category:Software]]

2 KB (275 words) - 20:42, 28 April 2023
Tellseq
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.universalsequencing.com/software}}

2 KB (263 words) - 20:52, 18 May 2022
Xander
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 19:07, 10 June 2022
Sra-human-scrubber
[[Category:Software]][[Category:Genomics]]

3 KB (395 words) - 15:57, 22 August 2022
Glog
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (269 words) - 17:10, 15 August 2022
CRISP
[[Category:Software]][[Category:Phylogenetics]] CRISP is a software program to detect SNPs and short indels from pooled sequencing data. CRISP

3 KB (342 words) - 21:01, 6 December 2019
Open3d
[[Category:Software]][[Category:Graphics]] Open3D is an open-source library that supports rapid development of software that deals with 3D data. The Open3D frontend exposes a set of carefully sel

3 KB (414 words) - 17:16, 7 July 2023
SRA
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software}}

4 KB (601 words) - 19:10, 27 November 2023
Segemehl
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}

3 KB (406 words) - 22:30, 21 August 2022
PRANK
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (271 words) - 20:25, 12 August 2022
HASLR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 19:53, 17 August 2020
WHAMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (298 words) - 17:42, 22 August 2022
SPM
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.fil.ion.ucl.ac.uk/spm/software/spm8/}}

3 KB (327 words) - 17:00, 13 February 2024
BRM
[[Category:Software]][[Category:Phylogenetics]]

3 KB (320 words) - 21:54, 26 August 2020
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
LTRRetriever
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (255 words) - 21:21, 6 December 2019
Saige
[[Category:Software]][[Category:Genomics]]

3 KB (297 words) - 19:29, 20 January 2023
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
SeqPrep
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (371 words) - 22:38, 21 August 2022
MaSuRCA
[[Category:Software]][[Category:Biology]][[Category:Alignment]] MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Conse

3 KB (340 words) - 18:24, 18 August 2022
Cogent
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:06, 6 December 2019
Je
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (242 words) - 14:44, 10 June 2022
PHITS
[[Category:Software]][[Category:Physics]]

3 KB (339 words) - 18:12, 21 August 2022
Epiteome
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 15:06, 15 August 2022
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
Albacore
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (258 words) - 21:10, 6 December 2019
Laneta
[[Category:Software]]

2 KB (253 words) - 19:29, 12 August 2022
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
MATS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (332 words) - 18:25, 18 August 2022
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
Numba
[[Category:Software]][[Category:Compiler]]

3 KB (353 words) - 20:44, 15 August 2022
PALADIN
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 18:31, 10 June 2022
Maxima
[[Category:Software]][[Category:Math]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (298 words) - 21:21, 6 December 2019
BEAST2-XML
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 14:20, 2 September 2020
Vray
[[Category:Software]] |{{#vardefine:url|https://www.chaos.com/3d-rendering-software}}

3 KB (341 words) - 16:46, 6 April 2023
Category:Animation
[[Category:Software]]

3 members (0 subcategories, 0 files) - 16:17, 3 June 2022
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
GnuPlot
[[Category:Software]][[Category:Graphics]][[Category:Math]]

3 KB (421 words) - 17:13, 15 August 2022
SHAPEIT
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (263 words) - 12:56, 15 August 2022
Gcnenv
[[Category:Software]][[Category:Math]]

2 KB (243 words) - 19:38, 20 June 2023
Misa
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (253 words) - 19:52, 12 August 2022
Bcftools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 19:09, 11 April 2024
MIKE
[[Category:Software]][[Category:Modeling]][[Category:Geospatial]][[Category:Fluid Dynamics]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w

2 KB (259 words) - 20:26, 24 August 2022
ARKS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:15, 6 December 2019
Aster
[[Category:Software]]

2 KB (267 words) - 17:50, 28 August 2023
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
NetCDF
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}}

3 KB (402 words) - 14:56, 12 March 2024
Category:ChIP-Seq
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 20:57, 12 August 2022
Unrar
[[Category:Software]][[Category:utility]]

2 KB (239 words) - 19:16, 3 June 2022
ScaLAPACK
[[Category:Software]][[Category: Programming]][[Category: Library]]

2 KB (273 words) - 19:40, 21 July 2022
MP-EST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

4 KB (489 words) - 12:01, 19 August 2022
Lbzip
[[Category:Software]][[Category:Compression]]

2 KB (274 words) - 14:23, 27 May 2022
GROCSVs
[[Category:Software]][[Category:Phylogenetics]] Genome-wide Reconstruction of Complex Structural Variants, or GROC-SVs, is a software pipeline for identifying large-scale structural variants, performing sequen

2 KB (274 words) - 21:21, 6 December 2019
CloudCompare
[[Category:Software]][[Category:Visualization]] CloudCompare is a 3D point cloud (and triangular mesh) processing software. It was originally designed to perform comparison between two 3D points clo

3 KB (314 words) - 18:20, 27 January 2020
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
GeNomad
[[Category:Software]][[Category:Biology]][[Category: genomics]]

3 KB (332 words) - 13:25, 7 April 2023
Pipits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (299 words) - 17:06, 10 June 2022
ProbABEL
[[Category:Software]][[Category:Genomics]][[Category:Biology]] ProbABEL software package is used for the analysis of genome-wide imputed SNP data and quanti

3 KB (371 words) - 19:35, 21 August 2022
INDELible
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/indelible/}}

3 KB (384 words) - 13:34, 28 June 2021
NCO
[[Category:Software]][[Category:Data Science]] |{{#vardefine:exe|}} 

3 KB (386 words) - 14:41, 19 August 2022
EXpress
[[Category:Software]][[Category:Biology]][[Category:NGS]] This module enables the use of the eXpress software

3 KB (383 words) - 18:53, 12 August 2022
Evigene
[[Category:Software]][[Category:Phylogenetics]] ...methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembl

3 KB (372 words) - 21:21, 6 December 2019
Open OnDemand
[[Category:Software]][[Category:GUI]]

7 KB (1,059 words) - 16:46, 5 May 2023
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
AlleleCount
[[Category:Software]][[Category:Biology]]

2 KB (243 words) - 15:34, 12 December 2022
TAPIS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (273 words) - 16:14, 10 June 2022
PDA
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/pda/}}

3 KB (294 words) - 21:23, 6 December 2019
CWLtool
[[Category:Software]][[Category:Workflow Automation]][[Category:Scheduler Apps]]

3 KB (326 words) - 18:29, 11 November 2022
SRAssembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (381 words) - 15:33, 27 May 2022
Category:Galaxy
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:03, 7 July 2017
Homopolish
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (298 words) - 15:54, 6 July 2022
Rnalysis
[[Category:Software]] RNAlysis is a Python-based software for analyzing RNA sequencing data. RNAlysis allows you to build customized

5 KB (648 words) - 16:12, 25 April 2023
DSuite
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (244 words) - 17:17, 2 June 2022
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
PHAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about hal

3 KB (320 words) - 17:17, 10 June 2022
NCBI C++ Toolkit
[[Category:Software]][[Category:Biology]][[Category:programming]][[Category:library]][[Category

3 KB (306 words) - 14:25, 19 August 2022
NOVOPlasty
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 21:23, 6 December 2019
ParGenes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 13:31, 28 April 2021
Cufflinks
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (307 words) - 14:17, 15 August 2022
M5nr
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 19:46, 12 August 2022
Category:Mapping
[[Category:Software]]

8 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
HMMER
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (397 words) - 18:18, 15 August 2022
Fpocket
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (268 words) - 19:02, 21 July 2022
Xterm
[[Category:Software]][[Category:Shell]]

2 KB (278 words) - 19:37, 11 July 2022
SNP-sites
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

3 KB (334 words) - 12:56, 15 August 2022
Clview
[[Category:Software]][[Category:Biology]]

2 KB (252 words) - 13:48, 15 August 2022
CONN
[[Category:Software]][[Category:imaging]] CONN is an open-source Matlab/SPM-based cross-platform software for the computation, display, and analysis of functional connectivity Magne

3 KB (293 words) - 20:32, 24 August 2022
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
MEGA
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Software suite for analyzing DNA and protein sequence data from species and populati

3 KB (337 words) - 20:30, 15 December 2020
SoX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 21:24, 6 December 2019
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
Khmer
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

4 KB (504 words) - 17:01, 14 December 2022
LZO
[[Category:Software]][[Category:Library]][[Category:Compression]]

3 KB (317 words) - 20:38, 10 June 2022
MiXCR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] MiXCR is a universal software for fast and accurate analysis of raw T- or B- cell receptor repertoire seq

3 KB (340 words) - 21:22, 6 December 2019
GARLI
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:exe|1}} 

3 KB (485 words) - 16:53, 15 August 2022
Pycharm-pro
[[Category:Software]]

2 KB (271 words) - 15:56, 27 June 2023
Genome Graph Annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 22:08, 27 August 2020
CLIFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:11, 6 December 2019
Miniprot
[[Category:Software]]

2 KB (246 words) - 19:48, 31 August 2023
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
Silo
[[Category:Software]][[Category:Library]]

3 KB (356 words) - 17:28, 10 June 2022
VAST-TOOLS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (264 words) - 17:26, 22 August 2022
Uproc
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (418 words) - 20:53, 12 August 2022
Libvips
[[Category:Software]][[Category:Image Processing]]

2 KB (255 words) - 20:10, 26 May 2022
MZMine
[[Category:Software]][[Category:Spectroscopy]][[Category:Biology]]

3 KB (417 words) - 13:28, 7 July 2023
Vscode
[[Category:Software]][[Category:Programming]]

3 KB (405 words) - 14:15, 26 February 2024
Filtlong
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (299 words) - 21:20, 6 December 2019
OpenMM
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (315 words) - 15:30, 19 August 2022
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
Matlab add-ons
[[Category:Software]]

2 KB (206 words) - 14:11, 30 June 2017
EPACTS
[[Category:Software]][[Category:Biology]][[Category:Biology]][[Category:Genomics]] ...Efficient and Parallelizable Association Container Toolbox) is a versatile software pipeline to perform various statistical tests for identifying genome-wide a

2 KB (269 words) - 18:52, 12 August 2022
Seq crumbs
[[Category:Software]][[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category ...th Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.

3 KB (328 words) - 15:12, 27 May 2022
GUI Programs
[[Category:Software]][[Category:GUI]] ...to acknowledge an Open Source [https://xpra.org Xpra Project] for creating software we built our GUI sessions on top of.

2 KB (390 words) - 14:42, 30 January 2023
EQtlBma
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (254 words) - 18:52, 12 August 2022
Msprime
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 22:49, 8 September 2020
Starseqr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 17:12, 31 May 2022
Nf-core
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]] Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most commo

3 KB (332 words) - 18:51, 15 August 2022
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
Galaxyml
[[Category:Software]][[Category:machine_Learning]]

2 KB (284 words) - 14:51, 27 January 2023
Salmon
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (305 words) - 19:29, 3 June 2022
Breakseq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:15, 6 December 2019
HAPCUT
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (298 words) - 18:13, 15 August 2022
Slicer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...le platforms, including Windows, Linux and Mac Os X. 3DSlicer is a desktop software used in medical and biomedical imaging. It serves as a development platform

3 KB (346 words) - 15:42, 8 April 2024
Sabre
[[Category:Software]][[Category:Phylogenetics]]

3 KB (356 words) - 16:32, 2 November 2020
GTDBTk
[[Category:Software]][[Category:Phylogenetics]] GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and

3 KB (299 words) - 15:08, 12 April 2022
ITSx
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://microbiology.se/software/itsx/}}

2 KB (275 words) - 19:52, 10 February 2020
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
IMPUTE2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 13:53, 16 September 2021
ISOWN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 21:21, 6 December 2019
ESOM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (242 words) - 15:08, 15 August 2022
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
Newbler
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]][[Category:De Nov Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for

2 KB (305 words) - 16:17, 19 August 2022
TrackTools
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}

2 KB (251 words) - 16:40, 22 August 2022
Modulus
[[Category:Software]]

3 KB (338 words) - 17:43, 29 August 2022
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
IDBA-UD
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (354 words) - 18:40, 15 August 2022
Rnaseqlib
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:RNA-Seq]]

2 KB (247 words) - 15:15, 10 June 2022
NONMEM
[[Category:Software]][[Category:Modeling]]

3 KB (439 words) - 21:23, 6 December 2019
CIRI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 21:11, 6 December 2019
SODA
[[Category:Software]]

2 KB (287 words) - 14:06, 29 March 2021
Trans-ABySS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (260 words) - 15:39, 10 June 2022
Trimesh
[[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh

2 KB (288 words) - 15:36, 9 March 2023

Search results

Navigation menu

Search