PBJelly

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Description

PBJelly website  

PBJelly is a highly automated pipeline that aligns long sequencing reads (such a PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. Each step in PBJelly's workflow can be run on a cluster, thus parallelizing the gap filling process for rapid turn around, even for very large eukaryotic genomes.

Required Modules

Serial

  • PBJelly

System Variables

  • HPC_PBJELLY_DIR
  • HPC_PBJELLY_BIN
  • HPC_PBJELLY_CONF
  • HPC_PBJELLY_TEST

Additional Information

This module includes the full PBSuite.




Validation

  • Validate 4/5/2018