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autometa website  

An automated binning pipeline for single metagenomes, in particular host-associated and highly complex ones.

Environment Modules

Run module spider autometa to find out what environment modules are available for this application.

System Variables

  • HPC_AUTOMETA_DIR - installation directory
  • HPC_AUTOMETA_BIN - executable directory


If you publish research that uses autometa you have to cite it as follows:

Miller, I. J.; Rees, E. R.; Ross, J.; Miller, I.; Baxa, J.; Lopera, J.; Kerby, R. L.; Rey, F. E.; Kwan, J. C. Autometa: Automated extraction of microbial genomes from individual shotgun metagenomes. Nucleic Acids Research, 2019. DOI: