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gsea website  

Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes).

Environment Modules

Run module spider gsea to find out what environment modules are available for this application.

System Variables

  • HPC_GSEA_DIR - installation directory
  • HPC_GSEA_BIN - executable directory


If you publish research that uses gsea you have to cite it as follows:

To cite your use of the GSEA software, a joint project of UC San Diego and Broad Institute, please reference Subramanian, Tamayo, et al.