IVA
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Description
IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high and variable depth.
Environment Modules
Run module spider iva to find out what environment modules are available for this application.
System Variables
- HPC_IVA_DIR - installation directory
- HPC_IVA_BIN - executable directory
Citation
If you publish research that uses iva you have to cite it as follows:
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28.