IMPUTE version 2 (also known as IMPUTE2) is a genotype imputation and haplotype phasing program based on ideas from Howie et al. 2009.
module spider impute2 to find out what environment modules are available for this application.
- HPC_IMPUTE2_DIR - installation directory
- HPC_IMPUTE2_BIN - executable directory
- HPC_IMPUTE2_DOC - documentation directory
- HPC_IMPUTE2_EXE - example directory
If you publish research that uses impute2 you have to cite it as follows:
B. N. Howie, P. Donnelly, and J. Marchini (2009) A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genetics 5(6): e1000529