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sqanti website  

SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length transcript sequencing, which are commonly returned in a fasta file format without any extra information about gene/transcript annotation or attribute description. SQANTI provides a wide range of descriptors of transcript quality and generates a graphical report to aid in the interpretation of the sequencing results.

Environment Modules

Run module spider sqanti to find out what environment modules are available for this application.

System Variables

  • HPC_SQANTI_DIR - installation directory
  • HPC_SQANTI_BIN - executable directory
  • HPC_SQANTI_UTI - utilities directory
  • HPC_SQANTI_DOC - documentation directory
  • HPC_SQANTI_EXE - example directory