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nextstrain website  

Nextstrain is an open-source project to harness the scientific and public health potential of pathogen genome data. We provide a continually-updated view of publicly available data with powerful analytics and visualizations showing pathogen evolution and epidemic spread. Our goal is to aid epidemiological understanding and improve outbreak response.

Environment Modules

Run module spider nextstrain to find out what environment modules are available for this application.

System Variables

  • HPC_NEXTSTRAIN_DIR - installation directory
  • HPC_NEXTSTRAIN_BIN - executable directory


If you publish research that uses nextstrain you have to cite it as follows:

Hadfield et al., Nextstrain: real-time tracking of pathogen evolution, Bioinformatics (2018)