Sniffles2
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Description
Sniffles2 website
A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data.
Environment Modules
Run module spider Sniffles2 to find out what environment modules are available for this application.
System Variables
- HPC_SNIFFLES2_DIR - installation directory
- HPC_SNIFFLES2_BIN - executable directory
Job Script Examples
See the Sniffles2_Job_Scripts page for Sniffles2 Job script examples.
Citation
If you publish research that uses Sniffles2 you have to cite it as follows:
Please cite our paper at:
https://www.nature.com/articles/s41592-018-0001-7
A new preprint for the new methods and improvements introduced with Sniffles2 is here: https://www.biorxiv.org/content/10.1101/2022.04.04.487055v1