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Sniffles2 website  
A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data.

Environment Modules

Run module spider Sniffles2 to find out what environment modules are available for this application.

System Variables

  • HPC_SNIFFLES2_DIR - installation directory
  • HPC_SNIFFLES2_BIN - executable directory

Job Script Examples

See the Sniffles2_Job_Scripts page for Sniffles2 Job script examples.


If you publish research that uses Sniffles2 you have to cite it as follows:

Please cite our paper at:

A new preprint for the new methods and improvements introduced with Sniffles2 is here: