NxTrim

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Description

nxtrim website  

Software to remove Nextera Mate Pair adapters and categorise reads according to the orientation implied by the adapter location. This software is not commercially supported.

Required Modules

Serial

  • gcc/5.2.0
  • nxtrim

System Variables

  • HPC_NXTRIM_DIR - installation directory




Citation

If you publish research that uses nxtrim you have to cite it as follows:

O’Connell, Jared, et al. "NxTrim: optimized trimming of Illumina mate pair reads." Bioinformatics 31.12 (2015): 2035-2037.