SHAPEIT

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Description

shapeit website  

SHAPEIT is a fast and accurate method for estimation of haplotypes (aka phasing) from genotype or sequencing data.

Required Modules

Serial

  • shapeit

System Variables

  • HPC_SHAPEIT_DIR - installation directory




Citation

If you publish research that uses shapeit you have to cite it as follows:

https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html#citations


Validation

  • Validate 4/5/2018