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reCOGnizer is a user-friendly implementation of protein functional identification using COG database.

  • It builds a split version of the COG database with which RPS-BLAST can run in multithread, significantly increasing the speed of the most time intensive step of protein annotation.
  • After COG assignment to proteins, reCOGnizer converts CDD IDs to their respective COGs, before organizing those COGs into a relational table of protein to COG, with the inclusion of the three levels of functional classification from COG.
  • reCOGnizer further converts assigned COG functions to EC numbers, providing more functional information.

Environment Modules

Run module spider recognizer to find out what environment modules are available for this application.

System Variables

  • HPC_RECOGNIZER_DIR - installation directory
  • HPC_RECOGNIZER_BIN - executable directory