Search results

NGS-SDK
[[Category:Software]][[Category:biology]][[Category:Healthcare]][[Category:library]][[Category:

3 KB (320 words) - 17:11, 19 August 2022
PsRobot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 17:12, 1 June 2022
Camino
[[Category:Software]][[Category:Imaging]][[Category:Biology]][[Category:Neuroscience]] Camino is an open-source software toolkit for diffusion MRI processing. The toolkit implements standard techn

3 KB (291 words) - 18:22, 12 August 2022
ANNOVAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

4 KB (545 words) - 14:16, 12 August 2022
Supercell
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 16:55, 10 June 2022
BoxCLI
[[Category:Software]][[Category:File Management]][[Category:Web]][[Category:Programming]]

2 KB (253 words) - 13:52, 21 October 2022
Talk:BioC Requirements Information Gathering
...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster

3 KB (493 words) - 21:42, 2 November 2011
GTOOL
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html}}

3 KB (319 words) - 12:51, 10 September 2020
CNCI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (374 words) - 14:09, 23 April 2021
ISOWN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 21:21, 6 December 2019
Juicer
[[Category:Software]][[Category:Genomics]]

3 KB (369 words) - 16:29, 15 October 2023
Bifrost
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:11, 6 December 2019
HTMLDoc
[[Category:Software]][[Category:Documentation]][[Category:Web]]

2 KB (253 words) - 18:34, 15 August 2022
Ms
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 12:30, 19 August 2022
Chewiesnake
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (457 words) - 15:02, 23 October 2023
Structure
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (325 words) - 16:03, 22 August 2022
EAGLE
[[Category:Software]][[Category:Phylogenetics]] The Enhanced Artificial Genome Engine (EAGLE) software is designed to simulate the behaviour of Illumina's Next Generation Sequenc

2 KB (266 words) - 22:29, 26 August 2020
AAFTF
[[Category:Software]][[Category:Biology]][[Category:Pipeline]][[Category:Assembly]]

2 KB (245 words) - 20:45, 11 August 2022
Rnaseqlib
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:RNA-Seq]]

2 KB (247 words) - 15:15, 10 June 2022
Meta-Tissue
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (328 words) - 19:24, 18 August 2022
MiniCaller
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (273 words) - 19:52, 12 August 2022
Hgtector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (253 words) - 17:04, 10 October 2022
PyDeface
[[Category:Software]][[Category:Imaging]]

2 KB (237 words) - 20:34, 24 August 2022
Category:Fluid Dynamics
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Genesis
[[Category:Software]] ...ftware under the LGPLv3. Earlier versions (<=1.4) were distributed as free software under the GPLv2 license.

3 KB (368 words) - 17:51, 3 April 2024
Sim4Life
[[Category:Software]][[Category:Biology]][[Category:Simulation]]

2 KB (271 words) - 18:20, 1 June 2022
HLAminer
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

4 KB (541 words) - 14:55, 14 December 2022
PICSL
[[Category:Software]] This package contains a software implementation for joint label fusion and

3 KB (390 words) - 20:31, 24 August 2022
QRNA
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://eddylab.org/software/qrna/}}

2 KB (251 words) - 17:39, 1 June 2022
JCVI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 14:30, 4 September 2020
Panseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:12, 17 November 2021
Tensorboard
...separate workload within a HiPerGator Desktop session. Many neural network software frameworks are able to stream training data to a TensorBoard log file.

2 KB (231 words) - 21:03, 12 December 2023
GenePainter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 21:20, 6 December 2019
Category:Pipeline
[[Category:Biology]][[Category:Software]]

8 members (0 subcategories, 0 files) - 15:27, 23 August 2022
TransDecoder
[[Category:Software]][[Category:Biology]][[Category:NGS]] A log-likelihood score similar to what is computed by the GeneID software is > 0.

3 KB (371 words) - 16:54, 22 August 2022
SNAP
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (372 words) - 20:42, 12 August 2022
SnpEff
[[Category:Software]][[Category:Biology]][[Category:Annotation]]

4 KB (562 words) - 15:19, 5 January 2023
Training
===Intel Software Tools Technical Webinar Series=== ...n information is available [http://software.intel.com/en-us/articles/intel-software-tools-technical-webinar-series here].

3 KB (484 words) - 13:21, 10 January 2023
Mirdeep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 18:00, 27 May 2022
Inspector
[[Category:Software]][[Category:biology]][[Category:Genomics]]

3 KB (319 words) - 18:50, 15 August 2022
CMWP
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (329 words) - 17:57, 10 June 2022
BWA-PSSM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 21:12, 6 December 2019
Nvhpc
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Library]][[Categor

3 KB (334 words) - 17:24, 19 August 2022
MarkerMiner
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (385 words) - 19:47, 12 August 2022
QuorUM
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 21:24, 6 December 2019
AtomEye
[[Category:Software]][[Category:Material Science]] AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics cor

3 KB (351 words) - 15:21, 12 August 2022
Krona
[[Category:Software]][[Category:Biology]]

2 KB (254 words) - 19:29, 12 August 2022
Libint
[[Category:Software]][[Category:Library]]

2 KB (252 words) - 15:41, 6 June 2022
Pytorch
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (257 words) - 15:56, 6 June 2022
MinkowskiEngine
[[Category:Software]][[Category:Machine Learning]]

2 KB (256 words) - 17:52, 31 May 2022
MAGeCK
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 21:21, 6 December 2019
Deepfri
[[Category:Software]][[Category:Machine Learning]][[Category:Biology]]

2 KB (290 words) - 19:30, 10 March 2023
Metaxa2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://microbiology.se/software/metaxa2/}}

3 KB (300 words) - 19:29, 18 August 2022
Ea-utils
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

4 KB (438 words) - 14:54, 15 August 2022
FFmpeg
[[Category:Software]][[Category:Audio]][[Category:Visualization]]

2 KB (252 words) - 16:41, 15 August 2022
Phenix
[[Category:Software]][[Category:Material Science]] PHENIX is a software suite for the automated determination of macromolecular structures using X-

3 KB (325 words) - 18:12, 21 August 2022
Allhic
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (299 words) - 12:35, 12 August 2022
SNPGenie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (423 words) - 18:41, 1 June 2022
PRINSEQ++
[[Category:Software]][[Category:phylogenetics]]

2 KB (298 words) - 18:11, 15 April 2020
MeShClust
[[Category:Software]][[Category:Biology]]

2 KB (244 words) - 20:44, 27 January 2021
Auto3DEM
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://cryoem.ucsd.edu/wikis/software/start.php?id=auto3dem:home}}

3 KB (433 words) - 15:24, 12 August 2022
Pbtranscript-tofu
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (324 words) - 20:11, 24 August 2022
Magpurify
[[Category:Software]] Each module in the software package was designed to be highly specific. This means that not all contami

3 KB (332 words) - 17:35, 24 May 2023
Create SSH Keys Using Putty
==Prerequisite software== Here is a list of the software you will need to be installed on your local machine to start using key-base

7 KB (1,195 words) - 13:39, 26 June 2023
OpenFOAM
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|}} 

3 KB (445 words) - 14:20, 15 December 2022
ANDI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 14:11, 20 February 2023
Pbipa
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] Improved Phased Assembler (IPA) is the official PacBio software for HiFi genome assembly. IPA was designed to utilize the accuracy of PacBi

2 KB (268 words) - 21:58, 27 April 2022
Nsight
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

3 KB (316 words) - 20:39, 24 August 2022
NECAT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 13:32, 23 June 2020
Face morpher
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 15:18, 15 August 2022
HyDe
[[Category:Software]][[Category:Phylogenetics]] HyDe is a software package that detects hybridization in phylogenomic data sets using phylogen

3 KB (301 words) - 20:41, 30 September 2020
GMP
[[Category:Software]][[Category:Library]]

3 KB (373 words) - 13:43, 3 June 2022
NtEdit
[[Category:Software]][[Category:Phylogenetics]]

3 KB (316 words) - 21:23, 6 December 2019
CIMS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (315 words) - 17:21, 10 June 2022
Mykrobe
[[Category:Software]]

2 KB (246 words) - 16:37, 21 June 2023
Deepmicrobes
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Machine Learning]]

2 KB (240 words) - 14:33, 15 August 2022
Deepvariant
[[Category:Software]]

3 KB (356 words) - 13:17, 16 April 2024
CasOFFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 21:58, 26 August 2020
HMMRATAC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 14:22, 7 May 2021
Software Development
#REDIRECT [[Software Development Policies]]

43 bytes (4 words) - 20:46, 6 June 2022
Illumina-utils
[[Category:Software]][[Category:Phylogenetics]]

2 KB (295 words) - 18:43, 15 August 2022
MASSMINE
[[Category:Software]][[Category:Data Mining]] ...u do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].

4 KB (562 words) - 15:42, 14 December 2022
GPhoCS
[[Category:Software]][[Category:Phylogenetics]] G-PhoCS is a software package for inferring ancestral population sizes, population divergence tim

3 KB (300 words) - 21:20, 6 December 2019
MMSEQ
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (387 words) - 20:50, 18 August 2022
BPGA
[[Category:Software]][[Category:Biology]][[Category:NGS]] BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms.

2 KB (293 words) - 21:13, 6 December 2019
Slivar
[[Category:Software]][[Category:Biology]]

2 KB (295 words) - 19:28, 10 December 2023
Perl
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (811 words) - 17:56, 2 January 2023
Applications FAQ
...n package from a binary archive (wheel) that was built on a system against software libraries that are not compatible with HiPerGator. A typical error message > devtools::install_github("author/software")

4 KB (579 words) - 20:42, 16 October 2023
The silver searcher
[[Category:Software]][[Category:Search]]

2 KB (248 words) - 14:33, 29 June 2021
Sra-human-scrubber
[[Category:Software]][[Category:Genomics]]

3 KB (395 words) - 15:57, 22 August 2022
FFTW
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (223 words) - 16:41, 15 August 2022
Redundans
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
Qsiprep
[[Category:Software]] ...r processing diffusion-weighted MRI (dMRI) data. The main features of this software are:

3 KB (324 words) - 16:13, 17 October 2023
Coreutils
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/coreutils/}}

2 KB (301 words) - 14:09, 15 August 2022
Jabba
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:21, 6 December 2019
CellProfiler
[[Category:Software]][[Category:Phylogenetics]] CellProfiler is free open-source software designed to enable biologists without training in computer vision or progra

8 KB (910 words) - 21:29, 21 December 2022
Generative AI
This page describes the collection of Generative AI software on HiperGator. Generative AI is a subset of artificial intelligence that fo *'''OpenCV''': An open-source computer vision and machine learning software library containing more than 2,500 optimized algorithms for real-time compu

7 KB (922 words) - 16:56, 14 May 2024
TRNAscan-Se
[[Category:Software]][[Category:biology]][[Category:NGS]] ...nce analysis, but is applicable to other DNAs as well. It applies our COVE software (see below) with a carefully built tRNA covariance model, while getting aro

3 KB (389 words) - 20:53, 12 August 2022
MIA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (347 words) - 19:52, 12 August 2022
Python-core
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (318 words) - 20:04, 21 August 2022
Vcontact
[[Category:Software]][[Category:Phylogenetics]]

3 KB (358 words) - 20:04, 27 May 2022
SE-MEI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 22:30, 21 August 2022
Pbsmrtpipe
[[Category:Software]][[Category:Biology]][[Category:Programming]]

2 KB (239 words) - 18:05, 15 August 2022
GroopM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:20, 6 December 2019
Tandem-Genotypes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:01, 1 June 2022
FastStructure
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (297 words) - 18:54, 12 August 2022
Screen
[[Category:Software]][[Category:Programming]][[Category:Shell]] |{{#vardefine:url|https://www.gnu.org/software/screen/}}

3 KB (441 words) - 22:30, 21 August 2022
BLASR
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (236 words) - 18:17, 12 August 2022
Sputnik
[[Category:Software]][[Category:Biology]]

2 KB (311 words) - 15:50, 22 August 2022
NanoSV
[[Category:Software]][[Category:Biology]][[Category:Genomics]] NanoSV is a software package that can be used to identify structural genomic variations in long-

2 KB (282 words) - 14:23, 19 August 2022
Portcullis
[[Category:Software]][[Category:Phylogenetics]]

3 KB (343 words) - 19:18, 31 January 2022
Basemount
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (375 words) - 18:50, 10 June 2022
Blocked Accounts
* Improper password in various SFTP software clients (FileZilla, etc.)

2 KB (337 words) - 21:37, 29 January 2024
PacMAP
[[Category:Software]][[Category:Genomics]]

3 KB (304 words) - 18:24, 11 February 2023
Gubbins
[[Category:Software]][[Category:Phylogenetics]]

3 KB (335 words) - 17:28, 15 August 2022
BreakDancer
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:16, 6 December 2019
VS Code Remote Development
* By using the software, you agree to

7 KB (1,100 words) - 17:42, 5 March 2024
Nbody
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|1}} 

2 KB (248 words) - 13:11, 6 June 2022
PolyGembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:45, 3 November 2020
ExpansionHunter
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:36, 8 March 2022
LFMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (337 words) - 19:50, 15 August 2022
RIGERJ
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 21:24, 6 December 2019
Deprecation
[[Category:Software]] ...databases that are going to be deprecated. The modules are removed and the software is put into the REMOVE directories to be removed 6 months after being added

9 KB (946 words) - 22:32, 15 December 2022
GoPHY
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 14:40, 12 November 2020
IGB
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (257 words) - 18:41, 15 August 2022
Loter
[[Category:Software]] Dias-Alves, T., Mairal, J., Blum, M.G.B., 2018. Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species. Mol Biol Evol

2 KB (297 words) - 17:15, 20 March 2023
Tigmint
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 21:29, 6 December 2019
RNAhybrid
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (285 words) - 20:56, 12 August 2022
KisSplice
[[Category:Software]][[Category:Biology]] KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It

3 KB (359 words) - 19:33, 15 August 2022
Momi
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (305 words) - 19:03, 4 April 2022
Localbrainage
[[Category:Software]][[Category:Biology]][[Category:Machine Learning]]

2 KB (238 words) - 19:30, 12 August 2022
LSD2
[[Category:Software]][[Category:Phylogenetics]] If you use this software, please cite: “Fast dating using least-squares criteria and algorithms”

2 KB (269 words) - 20:45, 30 April 2020
Svim-asm
[[Category:Software]][[Category:Biology]]

3 KB (306 words) - 17:16, 31 May 2022
REAPR
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:url|http://www.sanger.ac.uk/resources/software/reapr/#t_2}}

3 KB (320 words) - 21:35, 21 August 2022
Parsnp
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (297 words) - 21:22, 6 December 2019
SiLiX
[[Category:Software]][[Category:Phylogenetics]] The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new alg

3 KB (287 words) - 21:24, 6 December 2019
MiRDP2
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (328 words) - 18:09, 31 May 2022
Circos
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://circos.ca/software/download/circos/}}

3 KB (409 words) - 13:35, 15 August 2022
JACUSA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (240 words) - 19:08, 15 August 2022
Nanostripper
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (250 words) - 21:15, 13 May 2022
Modules
[[Category:Software]][[Category:Infrastructure]] ...g and maintaining your environment while running a large number of diverse software applications with different requirements can be a daunting task. The Resea

3 KB (428 words) - 18:21, 7 February 2023
EVidenceModeler
[[Category:Software]][[Category:Phylogenetics]] The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments in

3 KB (311 words) - 14:59, 27 July 2020
CycleGan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (249 words) - 15:06, 14 April 2021
Fqtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are su

3 KB (359 words) - 16:47, 15 August 2022
Ibdne
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (308 words) - 17:05, 27 May 2022
ElPrep
[[Category:Software]][[Category:Phylogenetics]]

3 KB (345 words) - 21:20, 6 December 2019
Nanodisco
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:37, 27 August 2021
DAWGPAWS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 21:20, 6 December 2019
Stable-diffusion
[[Category:Software]][[Category:Machine Learning]]

2 KB (245 words) - 17:04, 31 January 2023
Novoalign
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (370 words) - 17:19, 19 August 2022
ConPADE
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 22:14, 26 August 2020
Delineate
[[Category:Software]]

3 KB (303 words) - 20:46, 18 May 2021
Racon
[[Category:Software]][[Category:Phylogenetics]]

3 KB (364 words) - 21:24, 21 August 2022
ADMB
[[Category:Software]][[Category:Math]][[Category:Modeling]]

3 KB (302 words) - 20:49, 11 August 2022
Monolix
[[Category:Software]][[Category:Modeling]][[Category:Biology]]

2 KB (287 words) - 11:57, 19 August 2022
OpenPIV-python
[[Category:Software]][[Category:Programming]][[Category:Imaging]] OpenPIV is open source Particle Image Velocimetry analysis software.

2 KB (291 words) - 12:23, 26 August 2022
MODELTEST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:18, 10 June 2022
ShapeMapper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (387 words) - 21:24, 6 December 2019
Quarto
[[Category:Software]]

3 KB (327 words) - 14:09, 27 February 2024
Gmap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (450 words) - 17:11, 15 August 2022
Gepard
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 22:10, 27 August 2020
MuSE
[[Category:Software]][[Category:Phylogenetics]]

3 KB (333 words) - 13:23, 19 July 2021
Python
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (670 words) - 19:42, 3 February 2023
Pygot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (248 words) - 21:24, 6 December 2019
Hpsandbox
[[Category:Software]]

2 KB (264 words) - 22:27, 1 February 2023
MOTU
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bork.embl.de/software/mOTU/}}

3 KB (328 words) - 12:00, 19 August 2022
RELION
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (355 words) - 03:29, 16 May 2024
Groovy
[[Category:Software]][[Category:Programming]]

2 KB (281 words) - 21:21, 6 December 2019
TRITONSERVER
[[Category:Software]][[Category:Machine Learning]]

2 KB (298 words) - 20:06, 21 August 2022
Prokka
[[Category:Software]][[Category:Biology]][[Category:Assembly]][[Category:Genomics]] |{{#vardefine:url|http://www.vicbioinformatics.com/software.prokka.shtml}}

2 KB (297 words) - 19:41, 21 August 2022
Tbb
[[Category:Software]][[Category:library]]

2 KB (259 words) - 21:29, 6 December 2019
Trim Galore
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (512 words) - 20:52, 12 August 2022
PartitionFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (402 words) - 16:57, 21 August 2022
Megalodon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 22:24, 8 September 2020
DScribe
[[Category:Software]][[Category:Machine Learning]]

2 KB (267 words) - 16:52, 17 December 2021
Ucsc-maskoutfa
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 20:09, 1 June 2022
SimSeq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (283 words) - 22:59, 21 August 2022
ViewBS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (384 words) - 17:30, 22 August 2022
Rolling Upgrade from RHEL7 to RHEL8
...at Enterprise Linux version 7 (RHEL-7) to version 8 (RHEL-8). The upgraded software environment includes updates to important components including, but not lim Some programs/workflows run in the updated software environment without any modification, and some require recompilation or ada

1 KB (164 words) - 16:06, 28 September 2023
RNAsalsa
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (368 words) - 21:24, 6 December 2019
Olego
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (309 words) - 17:44, 19 August 2022
Forecasting
[[Category:Software]]

3 KB (308 words) - 14:41, 27 January 2023
Liftoff
[[Category:Software]][[Category:Phylogenetics]]

3 KB (399 words) - 13:14, 23 September 2020
Ksrates
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (264 words) - 13:30, 15 August 2022
Shogun
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 18:14, 1 June 2022
GUAVA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 21:20, 6 December 2019
LAStools
[[Category:Software]][[Category:Imaging]]

2 KB (292 words) - 19:37, 15 August 2022
Fairseq
[[Category:Software]][[Category:Modeling]][[Category:Machine Learning]]

3 KB (296 words) - 15:18, 15 August 2022
Linksbrowser
[[Category:Software]][[Category:Web]]

2 KB (257 words) - 17:50, 15 August 2022
CoMap
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (378 words) - 18:39, 12 August 2022
GrADS
[[Category:Software]][[Category:Geospatial]][[Category:Math]]

3 KB (334 words) - 20:26, 24 August 2022
FlairNLP
[[Category:Software]][[Category:Machine Learning]]

3 KB (419 words) - 15:42, 25 August 2022
Generic Mapping Tools
[[Category:Software]]

3 KB (336 words) - 16:56, 10 October 2022
Maskrc-svg
[[Category:Software]][[Category:Genomics]]

2 KB (255 words) - 20:32, 26 January 2023
OneFormer
[[Category:Software]][[Category:Imaging]][[Category:Image Processing]][[Category:AI]]

2 KB (246 words) - 14:25, 7 April 2023
RSeQC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (328 words) - 17:48, 10 June 2022
PILON
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:phylogenetics]] Pilon is a software tool which can be used to:

3 KB (321 words) - 20:23, 12 August 2022
Ucsc-fafiltern
[[Category:phylogenetics]][[Category:Software]]

2 KB (244 words) - 17:11, 22 August 2022
DSSP
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (297 words) - 19:51, 13 June 2022
Libunistring
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.gnu.org/software/libunistring/}}

2 KB (269 words) - 15:49, 10 June 2022
Bracken
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://ccb.jhu.edu/software/bracken/}}

3 KB (402 words) - 19:01, 10 June 2022
Release
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (272 words) - 14:24, 11 October 2022
Velvet
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (523 words) - 17:06, 14 December 2022
RiboTaper
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/}}

3 KB (293 words) - 13:48, 20 May 2020
DecontaMiner
[[Category:Software]]

3 KB (321 words) - 14:56, 2 March 2021
CNVnator
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (251 words) - 15:34, 10 June 2022
GeneMarkS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 16:45, 27 May 2022
Genrich
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 21:21, 6 December 2019
ImageJ
[[Category:Software]][[Category:Imaging]]

2 KB (268 words) - 20:03, 10 June 2022
Gpufit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 19:34, 26 May 2022
Ont tutorial cas9
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 18:38, 2 June 2022
BrainIAK
[[Category:Software]][[Category:Imaging]]

3 KB (351 words) - 16:19, 27 May 2022
Orthologer
[[Category:Software]][[Category:Biology]] ...e:url|https://www.orthodb.org/orthodb_userguide.html#standalone-orthologer-software}}

2 KB (238 words) - 20:03, 31 May 2022
RepeatSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 15:29, 27 May 2022
ResFinder
[[Category:Software]]

3 KB (342 words) - 18:41, 23 April 2021
MIDAS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (305 words) - 17:23, 10 June 2022
Ksnp
[[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Variant Calling]] kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds

3 KB (327 words) - 12:56, 15 August 2022
Graph annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 21:20, 6 December 2019
Category:Physics
[[Category:Software]]

21 members (0 subcategories, 0 files) - 15:38, 19 September 2014
ALLMAPS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 21:11, 6 December 2019
Meson
[[Category:Software]][[Category:Programming]]

2 KB (237 words) - 15:56, 24 October 2023
TPMcalculator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 19:45, 1 June 2022
Eagle-rc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:30, 26 August 2020
Cliquesnv
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 20:24, 1 May 2024
NeEstimator
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.molecularfisherieslaboratory.com.au/neestimator-software/}}

3 KB (375 words) - 19:56, 12 August 2022
GULP
[[Category:Software]][[Category:Material Science]]

3 KB (311 words) - 18:09, 15 August 2022
DS9
[[Category:Software]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (322 words) - 13:07, 6 June 2022
PGAP
[[Category:Software]]

3 KB (393 words) - 14:29, 6 July 2022
SNeP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) traj

2 KB (278 words) - 16:23, 10 June 2022
Category:Compiler
[[Category:Software]] The [https://software.intel.com/en-us/intel-parallel-studio-xe Intel Compiler Suite] provides For

24 members (0 subcategories, 0 files) - 17:51, 27 September 2023
Plasme
[[Category:Software]]

3 KB (375 words) - 18:08, 3 April 2024
Simulia
[[Category:Software]][[Category:Simulation]][[Category:Visualization]]

2 KB (252 words) - 18:23, 1 June 2022
HmmCleaner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:25, 27 August 2020
Convert3D
[[Category:Software]]

2 KB (279 words) - 17:38, 15 August 2022
Anvio
[[Category:Software]][[Category:Biology]]

2 KB (237 words) - 14:20, 12 August 2022
Jo
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
Hapbin
[[Category:Software]]

3 KB (292 words) - 18:12, 15 August 2022
Pseudofinder
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 13:41, 11 October 2021
JVARKIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:21, 6 December 2019
Vaspkit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:51, 1 June 2022
VEP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (270 words) - 17:28, 22 August 2022
SMS
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 20:41, 12 August 2022
BRANCH
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Mapping]] BRANCH is a software that extends de novo transfrags and identifies novel transfrags with DNA co

3 KB (309 words) - 13:09, 15 August 2022
PsiCLASS
[[Category:Software]][[Category:Phylogenetics]]

4 KB (480 words) - 15:00, 14 December 2022
Mireap
[[Category:Software]][[Category:Biology]]

2 KB (258 words) - 20:43, 18 August 2022
Tiara
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 16:36, 22 August 2022
CFITSIO
[[Category:Software]][[Category:Library]][[Category:Compiler]]

2 KB (291 words) - 13:26, 15 August 2022
MECAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 18:29, 18 August 2022
Raven
[[Category:Software]][[Category:assembly]]

2 KB (284 words) - 21:14, 20 November 2023
Rvtests
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]] Rvtests, which stands for Rare Variant tests, is a flexible software package for genetic association analysis for sequence datasets.

3 KB (293 words) - 21:59, 21 August 2022
PySLURM
[[Category:Software]][[Category:Scheduler Apps]]

2 KB (235 words) - 18:29, 11 November 2022
MRtrix
[[Category:Software]][[Category:Biology]][[Category:Imaging]] ...Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage, 202 (

3 KB (311 words) - 20:34, 24 August 2022
ECE
[[Category:Software]][[Category:Physics]] Ece software container

3 KB (360 words) - 21:39, 3 March 2023
HipSTR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (340 words) - 14:50, 1 October 2020
RGAugury
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

3 KB (354 words) - 21:29, 30 November 2023
IAssembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (301 words) - 18:39, 15 August 2022
Resolve
[[Category:Software]] ...tion, visual effects, motion graphics and audio post production all in one software tool.

2 KB (261 words) - 13:59, 25 July 2023
Tax4Fun
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 18:29, 4 February 2020
IQ-TREE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.cibiv.at/software/iqtree/}}

3 KB (395 words) - 14:51, 14 December 2022
Dynare
[[Category:Software]][[Category:Math]] Dynare is a software platform for handling a wide class of economic models, in particular dynami

3 KB (382 words) - 21:20, 6 December 2019
Mutmap
[[Category:Software]]

2 KB (236 words) - 16:06, 21 June 2023
Smartie-sv
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 18:30, 1 June 2022
Quantisnp
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (297 words) - 20:29, 12 August 2022
HOOMD
[[Category:Software]][[Category:Library]][[Category:Math]]

5 KB (607 words) - 15:40, 6 June 2022
Phynd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 18:13, 15 April 2020
UNCALLED
[[Category:Software]]

2 KB (281 words) - 20:53, 12 August 2022
Poretools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:50, 21 August 2022
Pbcore
[[Category:Software]][[Category:biology]]

2 KB (244 words) - 20:16, 12 August 2022
AMICO
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

2 KB (247 words) - 12:40, 12 August 2022
Gem5
[[Category:Software]][[Category:Simulation]]

3 KB (434 words) - 19:23, 10 June 2022
ESPRIT
[[Category:Software]][[Category:Biology]]

4 KB (460 words) - 15:10, 15 August 2022
Giggle
[[Category:Software]]

2 KB (268 words) - 20:58, 24 February 2023
How To ResVault
The full documentation for tiCrypt software can be found at [https://ticrypt.com/docs/frontend2/getting-started tiCrypt # Run the installer software for the tiCrypt Connect client and follow the prompts.

6 KB (953 words) - 20:01, 18 July 2023
GRASS
[[Category:Software]][[Category:Geospatial]] ...ort System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, g

5 KB (593 words) - 21:27, 14 December 2022
Finesse
[[Category:Software]][[Category:Simulation]] ...aussian beams can be used to model spatial effects. Finesse is open source software distributed for OSX, Linux, and Windows. It has benefited from years of emp

3 KB (347 words) - 00:01, 9 July 2020
IsoSel
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://doua.prabi.fr/software/isosel}}

3 KB (345 words) - 14:29, 26 March 2021
Xwalk
[[Category:Software]]

3 KB (345 words) - 16:47, 28 February 2023
GROMACS
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

4 KB (556 words) - 19:16, 5 January 2023
Sourmash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 15:45, 22 August 2022
ClonalFrame
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

3 KB (349 words) - 18:33, 12 August 2022
IsPcr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:22, 6 December 2019
Dsistudio
[[Category:Software]][[Category:Machine Learning]] DSI Studio is a tractography software tool that maps brain connections and correlates findings with neuropsycholo

2 KB (277 words) - 20:10, 23 May 2022
Export2graphlan
export2graphlan is a conversion software tool for producing both

3 KB (314 words) - 15:12, 15 August 2022
CBGpipe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:59, 26 August 2020
News:2021-05-10
Software profiling is key to achieve the best performance on a system. It is importa * Software resources

5 KB (750 words) - 16:47, 23 August 2022
SHEsisPlus
[[Category:Software]][[Category:Biology]][[Category:Genomics]] SHEsisPlus is a a software package for analysis of genetic association, Hardy-weinberg equilibrium, li

3 KB (344 words) - 15:04, 19 August 2022
AutoDock
[[Category:Software]][[Category:Biology]]

2 KB (268 words) - 15:47, 10 June 2022
WhatsHap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-b

2 KB (269 words) - 21:29, 6 December 2019
Read2tree
[[Category:Software]][[Category:Phylogenetics]] read2tree is a software tool that allows users to obtain alignment matrices for tree inference. It

2 KB (292 words) - 18:42, 12 July 2023
Draft:UFRC Help and Documentation Testy
==Software and Reference Data== | style="width: 7%; vertical-align: left" | [[Image:Software.png|right|frameless|upright=0.25]]

4 KB (540 words) - 14:05, 30 March 2023
LASTZ
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (284 words) - 19:30, 12 August 2022
Jasper
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (354 words) - 16:42, 14 December 2023
Last
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (342 words) - 19:29, 12 August 2022
FastGEAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] FastGEAR is a software for analyzing sequence alignments.

3 KB (313 words) - 20:13, 18 October 2022
PyEGA3
[[Category:Software]]

3 KB (340 words) - 19:01, 29 June 2021
NextGenMap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 16:24, 19 August 2022
Freesurfer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'lau

3 KB (323 words) - 20:09, 12 August 2022
FAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:21, 6 December 2019
Anchorwave
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (367 words) - 21:10, 20 September 2023
RSEM
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data

3 KB (390 words) - 21:59, 21 August 2022
Vcflib
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (390 words) - 20:54, 12 August 2022
PhyloBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (375 words) - 20:20, 12 August 2022
Simulation and Modeling
[[Category:Software]][[Category:Machine Learning]][[Category:GPU]]

1 KB (142 words) - 20:34, 9 May 2024
TRIPLEC
[[Category:Software]][[Category:biology]] |{{#vardefine:url|http://www.cibiv.at/software/triplec/}}

3 KB (308 words) - 20:52, 12 August 2022
GSNP
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://jil.genomics.org.cn/index.php/en/software/gsnp.html}}

3 KB (459 words) - 17:27, 15 August 2022
CMake
[[Category:Software]][[Category:Programming]] ...designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configur

3 KB (326 words) - 13:49, 15 August 2022
VarSim
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 14:44, 4 September 2020
Amrfinderplus
[[Category:Software]][[Category:Phylogenetics]]

4 KB (447 words) - 15:59, 27 May 2022
Piranha
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/piranha/}}

2 KB (266 words) - 16:02, 10 June 2022
Go
[[Category:Software]][[Category:Language]]

3 KB (305 words) - 19:05, 6 June 2022
Textract
[[Category:Software]]

3 KB (304 words) - 13:55, 21 October 2022
Omniverse
[[Category:Software]][[Category:Library]][[Category:Math]]

7 KB (983 words) - 14:48, 25 July 2023
SCRATCH-1D
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (381 words) - 20:35, 12 August 2022
Nvidia CUDA Toolkit
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Graphics]][[Categor ...cs processing unit (GPU). With millions of CUDA-enabled GPUs sold to date, software developers, scientists and researchers are finding broad-ranging uses for G

4 KB (543 words) - 13:44, 20 November 2023
WebLogo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Graphics]]

3 KB (417 words) - 17:40, 22 August 2022
XY-Meta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 16:15, 6 June 2022
Ezaai
[[Category:Software]][[Category:biology]][[Category:Phylogenetics]]

2 KB (282 words) - 15:13, 15 August 2022
Samba Access
...:''' There is a known issue with the CIFS client in Mac Finder. The Finder software in current version of MacOS does not have a refresh button to update conten

5 KB (816 words) - 17:31, 31 August 2023
LibMesh
[[Category:Software]][[Category:Math]]

2 KB (281 words) - 19:51, 15 August 2022
Bax2bam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 14:05, 10 December 2019
Sim4
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (302 words) - 20:41, 12 August 2022
FGTPartitioner
[[Category:Software]] ...stry breakpoints in large genome-wide SNP datasets. Journal of Open Source Software, 5(46), 2030, https://doi.org/10.21105/joss.02030

2 KB (266 words) - 19:05, 28 June 2023
NCL
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

3 KB (329 words) - 20:05, 24 August 2022
Dapars
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (306 words) - 20:05, 23 March 2023
Pufferfish
[[Category:Software]][[Category:Biology]]

3 KB (351 words) - 17:32, 31 July 2023
Popcorn
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (260 words) - 18:49, 21 August 2022
SortMeRNA
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (299 words) - 17:00, 10 June 2022
BAM-matcher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 21:07, 6 December 2019
GeneMarkS-T
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:25, 2 June 2022
OmniCLIP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 14:52, 12 November 2020
Transrate
[[Category:Software]][[Category:Biology]][[Category:Assembly]] Transrate is software for de-novo transcriptome assembly quality analysis. It examines your assem

3 KB (316 words) - 16:54, 22 August 2022
Fiji
[[Category:Software]][[Category:Image Processing]]

2 KB (248 words) - 16:42, 15 August 2022
MiRge
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:22, 6 December 2019
Delucs
[[Category:Software]]

3 KB (301 words) - 14:35, 15 August 2022
Rainbowfish
[[Category:Software]][[Category:Phylogenetics]]

2 KB (233 words) - 19:18, 2 June 2022
Pychopper
[[Category:Software]][[Category:Phylogenetics]][[Category:Sequencing]]

2 KB (262 words) - 18:12, 27 July 2022
Localizer
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:18, 26 May 2022
MOTUs
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 17:44, 1 May 2020
Peneasy
[[Category:Software]]

4 KB (460 words) - 18:26, 27 May 2022
Seq-Gen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://tree.bio.ed.ac.uk/software/seqgen/}}

3 KB (351 words) - 17:58, 10 June 2022
Email storage alert
[[Category:Software]]

2 KB (231 words) - 21:37, 5 July 2023
Satsuma
[[Category:Software]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
ATRAM
[[Category:Software]][[Category:Math]]

3 KB (350 words) - 15:23, 12 August 2022
Category:Visualization
[[Category:Software]][[Category:Data]]

19 members (0 subcategories, 0 files) - 14:53, 19 August 2022
AltAnalyze
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...), microarray platforms (Gene 1.0, Exon 1.0, junction and 3' arrays). This software requires no advanced knowledge of bioinformatics programs or scripting or a

3 KB (398 words) - 19:14, 10 June 2022
Pharmcat
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (288 words) - 20:19, 12 August 2022
WU BLAST
[[Category:Software]][[Category:Biology]]

3 KB (356 words) - 17:44, 22 August 2022
VirusDetect
[[Category:Software]][[Category:Phylogenetics]] VirusDetect is a software package that can efficiently and exhaustively analyze large-scale sRNA data

3 KB (377 words) - 23:22, 30 July 2020
Mvrsion
[[Category:Software]][[Category:Sequencing]]

2 KB (246 words) - 14:24, 29 November 2022
Tapir
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 16:40, 10 June 2022
MultiQC
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (285 words) - 19:54, 12 August 2022
Ncbi cli
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Library]]

3 KB (306 words) - 15:47, 9 June 2023
AMPtk
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (289 words) - 12:41, 12 August 2022
Model Card Toolkit
[[Category:Software]]

3 KB (333 words) - 15:31, 10 July 2023
MolProbity
[[Category:Software]][[Category:Biology]][[Category:Chemistry]]

2 KB (248 words) - 16:44, 30 January 2023
BFAST
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (276 words) - 18:16, 12 August 2022
Cp2k
[[Category:Software]][[Category:Chemistry]] CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, mole

3 KB (371 words) - 22:15, 26 August 2020
PhyloAcc
[[Category:Software]][[Category:Phylogenetics]] This is a software to detect the shift pattern of DNA substitution rate of a genomic region an

4 KB (469 words) - 20:53, 18 May 2021
SOAPec
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (322 words) - 17:14, 10 June 2022
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
MEME
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (292 words) - 19:50, 12 August 2022
Came
[[Category:Software]][[Category:Phylogenetics]]

3 KB (371 words) - 21:02, 6 December 2019
Applications
[[Category:Software]]

1 KB (138 words) - 13:26, 27 September 2022
MetaSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (277 words) - 21:21, 6 December 2019
Scikit-learn
[[Category:Software]][[Category:Data_Science]]

2 KB (272 words) - 21:23, 6 March 2024
CisGenome
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (249 words) - 18:30, 12 August 2022
GFF-Ex
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 22:10, 27 August 2020
Matt
[[Category:Software]]

2 KB (257 words) - 21:03, 6 April 2023
MentaLiST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (368 words) - 18:51, 10 June 2022
Ska2
[[Category:Software]][[Category:Alignment]][[Category:Biology]][[Category:Genomics]]

3 KB (365 words) - 20:51, 29 June 2023
Autodock-vina
[[Category:Software]]

3 KB (343 words) - 19:31, 9 November 2022
Nt
[[Category:Software]]

2 KB (262 words) - 14:38, 15 July 2022
SST-Core
[[Category:Software]][[Category:Simulation]]

3 KB (324 words) - 21:24, 6 December 2019
Centrifuge
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (355 words) - 21:05, 6 December 2019
Draft:UFRC Help and Documentation Testa
==[[:Category:Applications|Software and Reference Data]] [[Image:Software.png|left|frameless|upright=0.1]]==

4 KB (522 words) - 17:49, 31 January 2023
Rosetta
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]] Rosetta is the premier software suite for modeling macromolecular

3 KB (302 words) - 20:37, 10 June 2022
Taxtastic
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (263 words) - 15:45, 19 August 2022
Metabin
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

4 KB (588 words) - 19:25, 18 August 2022
QIIME
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

4 KB (555 words) - 15:15, 19 August 2022
Meryl
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 22:26, 8 September 2020
Csvtk
[[Category:Software]][[Category:Biology]]

2 KB (260 words) - 18:44, 12 August 2022
UKFractography
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 20:13, 1 June 2022
PHASE
[[Category:Software]][[Category:Phylogenetics]] In all cases, please specify the version of the software used, and any deviations from the default options.

2 KB (276 words) - 18:09, 21 August 2022
Mlpack
[[Category:Software]][[Category:Library]] ...M. Lozhnikov, Y. Mentekidis, S. Ghaisas, S. Zhang. Journal of Open Source Software 3:26, 2018.]

3 KB (301 words) - 19:43, 15 December 2020
YASM
[[Category:Software]][[Category:Programming]]

2 KB (292 words) - 17:53, 22 August 2022
Pyfaidx
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (340 words) - 19:58, 21 August 2022
BamBam
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://udall-lab.byu.edu/Research/Software/BamBam.aspx}}

3 KB (456 words) - 18:00, 12 August 2022
QOS Limits
CPU cores, Memory (RAM), GPU accelerators, software licenses, etc. are referred to as '''Trackable Resources''' (TRES) by the s

4 KB (598 words) - 03:35, 26 February 2023
MasHmap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (359 words) - 17:28, 27 May 2022
Metashape
[[Category:Software]] Agisoft Metashape is a stand-alone software product that performs photogrammetric processing of digital images and gene

2 KB (280 words) - 15:35, 14 March 2023
CLARK
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (271 words) - 16:28, 10 June 2022
SOAPaligner
[[Category:Software]][[Category:Phylogenetics]] ...(Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast

3 KB (334 words) - 21:24, 6 December 2019
ACTC
[[Category:Software]][[Category:Biology]]

2 KB (234 words) - 14:36, 7 April 2023
GAML
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 16:51, 15 August 2022
RGIS
[[Category:Software]][[Category:Geospatial]] ...software. RiverGIS is not intended to replace or compete with existing GIS software. It was designed to complement existing GIS packages (like ARC/INFO) and pr

3 KB (370 words) - 20:27, 24 August 2022
CovNMR
[[Category:Software]][[Category:Biology]]

3 KB (350 words) - 15:55, 23 August 2022
PhyML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (465 words) - 20:22, 12 August 2022
GenomeScope2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 22:07, 15 March 2022
BatMeth2
[[Category:Software]]

3 KB (324 words) - 18:57, 17 September 2021
InStruct
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 18:00, 11 March 2020
ReCOGnizer
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 17:03, 3 December 2020
REDItools2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 18:05, 1 June 2022
Picard-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

6 KB (882 words) - 15:25, 27 January 2023
VeryFastTree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 12 February 2021
Bowtie2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (465 words) - 14:48, 14 December 2022
MetaCluster
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (321 words) - 19:26, 18 August 2022
PHAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PHAST is a freely available software package for comparative and evolutionary genomics. It consists of about hal

3 KB (320 words) - 17:17, 10 June 2022
Sniffles2
[[Category:Software]]

2 KB (291 words) - 20:42, 12 August 2022
MAFFT
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://mafft.cbrc.jp/alignment/software/}}

2 KB (295 words) - 20:23, 15 August 2022
Glactools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 15:07, 20 May 2020
Merge peaks
[[Category:Software]][[Category:Workflow Automation]]

2 KB (254 words) - 18:51, 15 August 2022
GRIDSS
[[Category:Software]][[Category:Phylogenetics]] GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements.

3 KB (388 words) - 21:20, 6 December 2019
HPG Computation
...open a support ticket to request RC to install the software in one of our software environments if it will be widely used. ==Using installed software==

5 KB (760 words) - 17:35, 22 April 2024
Booster
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:11, 6 December 2019
ITK-SNAP
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] SNAP is a software application used to segment structures in 3D medical images. It provides se

3 KB (397 words) - 19:23, 12 August 2022
Napari
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 14:23, 19 August 2022
CryptoMiniSat
[[Category:Software]][[Category:Math]]

3 KB (325 words) - 14:13, 15 August 2022
Bwa-mem2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (361 words) - 16:11, 27 May 2022
Wgs
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (375 words) - 20:55, 12 August 2022
Purge haplotigs
[[Category:Software]]

3 KB (356 words) - 20:27, 12 August 2022
DECX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 17:54, 26 April 2021
PRICE
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://derisilab.ucsf.edu/software/price/}}

2 KB (286 words) - 16:26, 10 June 2022
BIRDS
[[Category:Software]][[Category:Imaging]][[Category:Workflow Automation]][[Category:Utility]]

2 KB (263 words) - 13:01, 15 August 2022
AMRPlusPlus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 21:19, 6 December 2019
Category:Molecular Dynamics
[[Category:Software]]

16 members (0 subcategories, 0 files) - 15:38, 19 August 2022
RAPSearch
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (304 words) - 21:24, 6 December 2019
Emerald
[[Category:Software]][[Category:Biology]]

3 KB (324 words) - 19:16, 29 October 2023
R
[[Category:Software]][[Category:Statistics]][[Category:Programming]] |{{#vardefine:exe|1}} 

6 KB (981 words) - 20:45, 16 October 2023
EGSnrc
[[Category:Software]][[Category:Phylogenetics]] ...eleased in 2000, as a complete overhaul of the Electron Gamma Shower (EGS) software package originally developed at the Stanford Linear Accelerator Center (SLA

3 KB (327 words) - 14:57, 15 August 2022
SSM
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 13:48, 10 June 2021
CLUMPP
[[Category:Software]][[Category:Biology]] You must have configuration files to be able to run this software. The example configuration file can be copied using the following command:

3 KB (351 words) - 18:33, 12 August 2022
BayesR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (253 words) - 15:01, 10 June 2022
DRAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:20, 6 December 2019
Asaq
[[Category:Software]][[Category:Alignment]][[Category:Sequencing]][[Category:Phylogenetics]] Please cite the following papers if you use Armadillo in your research and/or software.

3 KB (374 words) - 15:10, 1 June 2022
PROVEAN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impa

3 KB (350 words) - 20:27, 12 August 2022
Category:Annotation
[[Category:Software]]

8 members (0 subcategories, 0 files) - 19:54, 22 August 2022
Mopac
[[Category:Software]] MOPAC[1], the Molecular Orbital PACkage, is software for performing quantum chemistry calculations based on semiempirical thermo

3 KB (292 words) - 15:05, 8 April 2024
MUSCLE
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|}} 

2 KB (313 words) - 19:55, 12 August 2022
Humann2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (348 words) - 22:26, 27 August 2020
Monai
[[Category:Software]][[Category:Healthcare]]

6 KB (884 words) - 17:46, 5 May 2023
Exonerate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 18:53, 12 August 2022
KMC
[[Category:Software]][[Category:Phylogenetics]]

3 KB (343 words) - 14:34, 4 September 2020
GLMsingle
[[Category:Software]][[Category:imaging]]

2 KB (291 words) - 20:33, 24 August 2022
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
Wgsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (343 words) - 21:29, 6 December 2019
SQANTI2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 18:47, 1 June 2022
Vim
[[Category:Software]][[Category:Programming]][[Category:Language]]

3 KB (320 words) - 18:56, 21 August 2022
Brkraw
[[Category:Software]]

2 KB (287 words) - 13:35, 24 October 2022
QT
[[Category:Software]][[Category:Library]] |{{#vardefine:exe|}} 

2 KB (257 words) - 20:57, 21 August 2022
GeneRax
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:25, 12 October 2020
MixMHC2pred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:40, 8 September 2020
SQANTI3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 20:35, 27 May 2022
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
Astropy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 15:18, 12 August 2022
OMNIVERSE
[[Category:Software]][[Category:GPU]]

2 KB (272 words) - 21:05, 31 May 2023
MEGAN
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/megan6/}}

3 KB (338 words) - 15:38, 15 April 2024
PyRosetta
[[Category:Software]][[Category:biology]][[Category:structure]][[Category:modeling]]

2 KB (267 words) - 21:24, 6 December 2019
TotalView
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (335 words) - 12:02, 26 August 2022
Gaussian License
[[Category:Software]] * I am not a member of a research group developing software competitive to Gaussian.

1 KB (185 words) - 14:26, 30 June 2017
AliStat
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 20:18, 1 October 2020
Triobinning
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (276 words) - 13:31, 15 August 2022
RACA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (235 words) - 19:45, 10 June 2022
Longshot
[[Category:Software]][[Category:Genomics]]

3 KB (352 words) - 20:04, 26 July 2023
Glueviz
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 17:11, 15 August 2022
GCTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]] |{{#vardefine:url|http://cnsgenomics.com/software/gcta/index.html}}

3 KB (331 words) - 12:56, 15 August 2022
EDirect
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (357 words) - 14:55, 15 August 2022
ImageMagick
[[Category:Software]][[Category:Imaging]] ImageMagick® is a software suite to create, edit, compose, or convert bitmap images. It can read and w

3 KB (380 words) - 18:46, 15 August 2022
PRINSEQ
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (271 words) - 15:52, 10 June 2022
Cx oracle
[[Category:Software]][[Category:Database]][[Category:Utility]]

2 KB (269 words) - 14:22, 15 August 2022
AMAS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 12:38, 12 August 2022
PurgeDups
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 18:50, 27 May 2022
Pangolin
[[Category:Software]][[Category:Phylogenetics]] Software package for assigning SARS-CoV-2 genome sequences to global lineages.

2 KB (249 words) - 15:38, 28 January 2021
Meraculous
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (354 words) - 18:36, 10 June 2022
Pbalign
[[Category:Software]][[Category:biology]]

2 KB (243 words) - 20:15, 12 August 2022
AMP
[[Category:Software]][[Category:phylogenetics]]

2 KB (271 words) - 16:08, 6 June 2022
Geant4
[[Category:Software]][[Category:Physics]]

3 KB (416 words) - 19:34, 30 November 2022
Appreci8
[[Category:Software]]

4 KB (561 words) - 14:25, 12 August 2022
MEGAHIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (367 words) - 18:31, 18 August 2022
Mdanalysis
[[Category:Software]][[Category:Biology]][[Category:Physics]]

3 KB (387 words) - 19:49, 12 August 2022
Rebaler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 18:00, 1 June 2022
FlowCraft
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 14:18, 10 July 2020
IVar
[[Category:Software]]

3 KB (335 words) - 18:36, 26 March 2021
Ngsremix
[[Category:Software]]

2 KB (259 words) - 21:49, 28 February 2023
Grib api
[[Category:Software]][[Category:Compiler]][[Category:Library]] |{{#vardefine:url|https://software.ecmwf.int/wiki/display/GRIB}}

2 KB (278 words) - 17:22, 15 August 2022
RGI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 21:24, 6 December 2019
CRISPResso2
[[Category:Software]][[Category:Genomics]][[Category:Sequencing]][[Category:Biology]] CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome ed

2 KB (282 words) - 13:25, 11 October 2022
Unanimity
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Compiler]]

2 KB (268 words) - 17:48, 15 August 2022
EvoLSTM
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 18:52, 12 August 2022
ABruijn
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (354 words) - 20:09, 24 August 2022
Strelka
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (369 words) - 14:24, 10 October 2023
Finder
[[Category:Software]] independent software that generatess gene annotations in GTF format. finder

3 KB (345 words) - 16:42, 15 August 2022
EMC
[[Category:Software]][[Category:Simulation]]

2 KB (241 words) - 15:04, 15 August 2022
Conpair
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 17:29, 10 June 2022
DeNoGAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (272 words) - 21:20, 6 December 2019
PhiSpy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (291 words) - 21:23, 6 December 2019
Installing Personal Python Modules
[[Category:Python]][[Category:Software]] ...use this guide to install a small personal python module or a python-based software package that is packaged with distutils i.e. you install it with '<code>pyt

2 KB (243 words) - 14:51, 10 February 2023
Lambda
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Phylogenetics]]

2 KB (279 words) - 21:21, 6 December 2019
Github-cli
[[Category:Software]]

2 KB (266 words) - 20:06, 19 December 2023
OMindel
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:51, 31 May 2022
FASTphase
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://stephenslab.uchicago.edu/software.html#fastphase}}

2 KB (282 words) - 21:59, 27 August 2020

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