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quantisnp website  

QuantiSNP is designed to detect rare or de novo copy number alterations in normal DNA samples.

Environment Modules

Run module spider quantisnp to find out what environment modules are available for this application.

System Variables

  • HPC_QUANTISNP_DIR - installation directory


If you publish research that uses quantisnp you have to cite it as follows:

Colella, S.,* Yau, C.,* Taylor, J.M., Mirza, G., Butler, H., Clouston, P., Basset, A.S., Seller, A., Holmes, C., and Ragoussis, J. QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Research, 35(6):2013-2025 2007.