BAM-matcher
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Description
A simple tool for determining whether two BAM files contain reads sequenced from the same sample or patient by counting genotype matches at common SNPs.
BAM-matcher is most useful at comparing whole-genome-sequencing (WGS), whole-exome-sequencing (WES) and RNA-sequencing (RNA-seq) human data, but can also be customised to compare panel data or non-human data.
Environment Modules
Run module spider bam-matcher to find out what environment modules are available for this application.
System Variables
- HPC_BAM-MATCHER_DIR - installation directory
- HPC_BAM-MATCHER_BIN - executable directory
- HPC_BAM-MATCHER_EXE - example directory
- HPC_BAM-MATCHER_CONF - config directory
Citation
If you publish research that uses bam-matcher you have to cite it as follows: