Jump to navigation Jump to search


soapaligner website  

SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast and accurate alignment for huge amounts of short reads generated by Illumina/Solexa Genome Analyzer. Compared to soap v1, it is one order of magnitude faster. It require only 2 minutes aligning one million single-end reads onto the human reference genome. Another remarkable improvement of SOAPaligner is that it now supports a wide range of the read length.

Environment Modules

Run module spider soapaligner to find out what environment modules are available for this application.

System Variables

  • HPC_SOAPALIGNER_DIR - installation directory
  • HPC_SOAPALIGNER_BIN - executable directory
  • HPC_SOAPALIGNER_DOC - documentation directory