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RGAugury website  

A pipeline consisted of a couple of scripts for genome-wide RGAs prediction, most of single script in this package can work independently or together.

Environment Modules

Run module spider RGAugury to find out what environment modules are available for this application.

System Variables

  • HPC_RGAUGURY_DIR - installation directory
  • HPC_RGAUGURY_BIN - executable directory
  • HPC_RGAUGURY_LIB - library directory
  • SINGULARITYENV_PFAMDB - PFAM database directory inside the container
  • SINGULARITYENV_PERL5LIB - Perl library directory inside the container
  • SINGULARITYENV_PREPEND_PATH - pfam:interproscan directory inside the container

Additional Information

To run RGAugury, you should consider the following command usage as an example:

$ rgaugury </path/to/input_dir> -p <filename> -<other_arguments>

$ RGAugury.pl </path/to/input_dir> -p <filename> -<other_arguments>


If you publish research that uses RGAugury you have to cite it as follows:

Li, P., Quan, X., Jia, G., Xiao, J., Cloutier, S. and You, F.M. (2016) RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants. BMC genomics, 17, 852.