Ncbi cli

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ncbi_cli website  

NCBI Datasets is a resource that lets you gather data from across NCBI databases. Use it to find and download sequence, annotation, and metadata for genes and genomes using the command-line interface (CLI) tools.

Use datasets to download biological sequence data across all domains of life from NCBI.

Use dataformat to convert metadata from JSON Lines format to other formats.

Environment Modules

Run module spider ncbi_cli to find out what environment modules are available for this application.

System Variables

  • HPC_NCBI_CLI_BIN - executable directory
  • HPC_NCBI_CLI_DIR - installation directory