FastGEAR is a software for analyzing sequence alignments.
module spider fastgear to find out what environment modules are available for this application.
- HPC_FASTGEAR_DIR - installation directory
- HPC_FASTGEAR_BIN - executable directory
Run fastGear in your job script as
fastGear <INPUT_FILE> <OUTPUT_FILE> <INPUT_SPECS_FILE>
Note: <OUTPUT_FILE> must have a '.mat' extension as required in the manual.
If you publish research that uses fastgear you have to cite it as follows:
Mostowy, R., Croucher, N.J., Andam, C.P., Corander, J., Hanage, W.P. and Marttinen, P. (2017). Efficient inference of recent and ancestral recombination within bacterial populations. Molecular Biology and Evolution, 34(5), 1167-1182.