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hapbin website  

hapbin is a collection of tools for efficiently calculating Extended Haplotype Homozygosity (EHH), the Integrated Haplotype Score (iHS) and the Cross Population Extended Haplotype Homozogysity (XP-EHH) statistic.

Environment Modules

Run module spider hapbin to find out what environment modules are available for this application.

System Variables

  • HPC_HAPBIN_DIR - installation directory
  • HPC_HAPBIN_BIN - executable directory


If you publish research that uses hapbin you have to cite it as follows:

Maclean CA, Chue Hong NP, Prendergast JG. hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets. Mol Biol Evol. 2015 Nov;32(11):3027-9. doi: 10.1093/molbev/msv172