Metaxa2

From UFRC
Jump to navigation Jump to search

Description

metaxa2 website  

Metaxa2 is a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.

Required Modules

Serial

  • metaxa2

System Variables

  • HPC_METAXA2_DIR - installation directory




Citation

If you publish research that uses metaxa2 you have to cite it as follows:

Bengtsson-Palme J, Hartmann M, Eriksson KM, Pal C, Thorell K, Larsson DGJ, Nilsson RH: Metaxa2: Improved Identification and Taxonomic Classification of Small and Large Subunit rRNA in Metagenomic Data. Molecular Ecology Resources (2015). doi: 10.1111/1755-0998.12399


Validation

  • Validate 4/5/2018