RiboTaper

Description

REPLACE website  

RiboTaper is a new analysis pipeline for Ribosome Profiling (Ribo-seq) experiments, which exploits the triplet periodicity of ribosomal footprints to call translated regions.

Environment Modules

Run module spider REPLACE to find out what environment modules are available for this application.

System Variables

• HPC_REPLACE_DIR - installation directory
• HPC_REPLACE_BIN - executable directory

Citation

If you publish research that uses REPLACE you have to cite it as follows:

L.Calviello, N. Mukherjee, E. Wyler, H. Zauber, A. Hirsekorn, M. Selbach, M. Landthaler, B.Obermayer, U. Ohler(2016): Detecting actively translated open reading frames in ribosome profiling data Nature methods