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mrtrix website  

MRtrix provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

Environment Modules

Run module spider mrtrix to find out what environment modules are available for this application.

System Variables

  • HPC_MRTRIX_DIR - installation directory
  • HPC_MRTRIX_BIN - executable directory


If you publish research that uses mrtrix you have to cite it as follows:

Processing was performed using the MRtrix3 package (Tournier et al., 2019).
J.-D. Tournier, R. E. Smith, D. Raffelt, R. Tabbara, T. Dhollander, M. Pietsch, D. Christiaens, B. Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage, 202 (2019), pp. 116–37.