Sputnik

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Description

sputnik website  

Sputnik is a C language program that searches dna sequence files in Fasta format for microsatellite repeats. A sequence file is specified on the command line and the resulting hits are written to stdout along with their position in the sequence, length, and a score determined by the length of the repeat and the number of errors.

Required Modules

modules documentation

Serial

  • sputnik

System Variables

  • HPC_SPUTNIK_DIR - installation directory






Validation

  • Validated 4/5/2018