HmmCleaner is a tool to remove alignment and sequencing error containing segments from multiple sequence alignments (MSA) using profile hidden Markov models (pHMM). This tool is based on Bio::MUST modules and integrates into MUST environment.
module spider hmmcleaner to find out what environment modules are available for this application.
- HPC_HMMCLEANER_DIR - installation directory
- HPC_HMMCLEANER_BIN - executable directory