ATRAM

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Description

atram website  

aTRAM does targeted de novo assembly of loci from paired-end Illumina runs and consists of the following tools:

  • format_sra.pl: this script creates an aTRAM database from an Illumina paired-end short-read archive.
  • aTRAM.pl: this script runs aTRAM with a target sequence and the formatted short-read archive.

Required Modules

Serial

  • atram

System Variables

  • HPC_ATRAM_DIR





Validation

  • Validated 4/5/2018