Search results

CellRanger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell/software/pipelines/latest/what-is-cell-ranger}}

2 KB (294 words) - 18:24, 12 August 2022
EvoLSTM
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 18:52, 12 August 2022
Bowtie
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (443 words) - 13:06, 15 August 2022
CLIFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:11, 6 December 2019
Medusa
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 21:21, 6 December 2019
QDD
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

4 KB (485 words) - 20:08, 21 August 2022
Finder
[[Category:Software]] independent software that generatess gene annotations in GTF format. finder

3 KB (345 words) - 16:42, 15 August 2022
Xroms
[[Category:Software]]

2 KB (262 words) - 13:36, 12 January 2024
Uproc
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (418 words) - 20:53, 12 August 2022
IGoR
[[Category:Software]][[Category:Phylogenetics]] IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing dat

2 KB (271 words) - 13:52, 14 May 2020
Github-cli
[[Category:Software]]

2 KB (266 words) - 20:06, 19 December 2023
CD-HIT
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (354 words) - 18:24, 12 August 2022
Filtlong
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (299 words) - 21:20, 6 December 2019
FGMP
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 21:20, 6 December 2019
Diamond
[[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:url| http://ab.inf.uni-tuebingen.de/software/diamond/}}

3 KB (307 words) - 14:41, 15 August 2022
Freecad
[[Category:Software]][[Category:Modeling]]

2 KB (241 words) - 00:16, 15 February 2023
BLUPF90
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ran 90/95 for mixed model computations in animal breeding. The goal of the software is to be as simple as with a matrix package and as efficient as in a progra

2 KB (275 words) - 16:18, 10 June 2022
Seq crumbs
[[Category:Software]][[Category:biology]][[Category:sequencing]][[Category:genomics]][[Category ...th Unix pipes to create complex pipelines. There are already other similar software that uses this approach like fastx and biopieces.

3 KB (328 words) - 15:12, 27 May 2022
CDO
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

3 KB (350 words) - 19:34, 24 August 2022
Kover
[[Category:Software]][[Category:Phylogenetics]]

3 KB (336 words) - 15:43, 18 August 2020
R libraries
[[Category:Software]]

265 bytes (30 words) - 13:59, 30 June 2017
Starseqr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 17:12, 31 May 2022
NanoVar
[[Category:Software]][[Category:Phylogenetics]]

3 KB (294 words) - 21:23, 6 December 2019
Category:Database
[[Category:Software]]

5 members (0 subcategories, 0 files) - 15:33, 6 February 2015
GLMsingle
[[Category:Software]][[Category:imaging]]

2 KB (291 words) - 20:33, 24 August 2022
Glimmer
[[Category:Software]][[Category:Biology]][[Category:Annotation]] |{{#vardefine:url|https://ccb.jhu.edu/software/glimmer/index.shtml}}

3 KB (391 words) - 17:09, 15 August 2022
Breakseq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (247 words) - 21:15, 6 December 2019
PHITS
[[Category:Software]][[Category:Physics]]

3 KB (339 words) - 18:12, 21 August 2022
Xpclr
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:25, 26 August 2020
HyPhy
[[Category:Software]][[Category:Biology]][[Category:Genomics]] HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogene

3 KB (380 words) - 18:36, 15 August 2022
GTDBTk
[[Category:Software]][[Category:Phylogenetics]] GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and

3 KB (299 words) - 15:08, 12 April 2022
Iupred2a
[[Category:Software]]

2 KB (271 words) - 16:25, 12 October 2023
AStalavista
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (284 words) - 14:56, 12 August 2022
SQANTI3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 20:35, 27 May 2022
LIGR
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

2 KB (249 words) - 19:55, 15 August 2022
ESOM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (242 words) - 15:08, 15 August 2022
Galaxy Upgrade Highlights
[[Category:Software]][[Category:Galaxy]]

3 KB (417 words) - 20:34, 18 April 2018
Hifiasm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 22:23, 27 August 2020
ProSplign
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 17:08, 1 June 2022
Harvesttools
[[Category:Software]]

2 KB (285 words) - 17:38, 13 October 2022
Megraft
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://microbiology.se/software/megraft/}}

3 KB (293 words) - 18:35, 18 August 2022
Triobinning
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (276 words) - 13:31, 15 August 2022
CLIPSeqTools
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (303 words) - 20:30, 10 June 2022
NONMEM
[[Category:Software]][[Category:Modeling]]

3 KB (439 words) - 21:23, 6 December 2019
FastTree
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (388 words) - 16:39, 15 August 2022
GenGen
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] GenGen is a suite of free software tools to facilitate the analysis of high-throughput genomics data sets. The

3 KB (326 words) - 17:36, 10 June 2022
Sailfish
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]][[Category:RNA-Se |{{#vardefine:url|http://www.cs.cmu.edu/~ckingsf/software/sailfish/}}

4 KB (482 words) - 22:02, 21 August 2022
Fastai
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 18:03, 13 November 2020
Regtools
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]][[Category:Genomics]]

2 KB (254 words) - 21:41, 21 August 2022
Miniasm
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (306 words) - 20:10, 18 August 2022
FRAPOSA
[[Category:Software]][[Category:Phylogenetics]] ...es by using principle component analysis (PCA) with a reference panel. The software accompanies this paper. For any questions, please contact daiweiz at umich

2 KB (284 words) - 14:19, 16 September 2021
PyEXR
[[Category:Software]][[Category:Programming]]

2 KB (245 words) - 12:25, 26 August 2022
AEGeAn
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (287 words) - 16:31, 10 June 2022
Alienhunter
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (256 words) - 12:34, 12 August 2022
Category:Compression
[[Category:Software]]

5 members (0 subcategories, 0 files) - 17:21, 3 June 2022
IPOPT
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization.

2 KB (263 words) - 17:46, 15 August 2022
Yolov4 darknet
[[Category:Software]][[Category:Machine Learning]]

2 KB (244 words) - 19:21, 1 June 2022
Qctool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:12, 2 June 2022
Trgt
[[Category:Software]]

2 KB (273 words) - 14:45, 28 July 2023
LEfSe
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:14, 29 September 2020
EIGENSOFT
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://genetics.med.harvard.edu/reich/Reich_Lab/Software.html}}

3 KB (295 words) - 14:58, 15 August 2022
Pm4py
[[Category:Software]][[Category:Machine Learning]][[Category:Data Mining]]

3 KB (336 words) - 22:06, 5 June 2023
WOMBAT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 21:29, 6 December 2019
Snp2hla
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|https://software.broadinstitute.org/mpg/snp2hla/}}

3 KB (379 words) - 20:42, 12 August 2022
Rclone
[[Category:Software]][[Category:Web]]

6 KB (763 words) - 20:07, 30 October 2023
MetaGeneMark
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (298 words) - 21:22, 6 December 2019
Ncview
[[Category:Software]][[Category:Visualization]] |{{#vardefine:exe|}} 

2 KB (317 words) - 14:42, 19 August 2022
Open3d
[[Category:Software]][[Category:Graphics]] Open3D is an open-source library that supports rapid development of software that deals with 3D data. The Open3D frontend exposes a set of carefully sel

3 KB (414 words) - 17:16, 7 July 2023
Category:Material Science
[[Category:Software]]

5 members (0 subcategories, 0 files) - 19:53, 22 August 2022
GPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:14, 15 August 2022
ORCA
[[Category:Software]][[Category:Chemistry]][[Category:Structure]]

3 KB (399 words) - 14:03, 2 April 2024
Kma
[[Category:Software]][[Category:Library]][[Category:Data Science]]

2 KB (292 words) - 15:51, 30 January 2023
Category:Programming
[[Category:Software]]

77 members (0 subcategories, 0 files) - 21:45, 24 October 2022
TreeBreaker
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (271 words) - 21:29, 6 December 2019
AdapterRemoval
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 20:47, 11 August 2022
XCrySDen
[[Category:Software]][[Category:Material Science]]

2 KB (282 words) - 17:47, 22 August 2022
Funannotate
[[Category:Software]][[Category:Phylogenetics]] ...t has evolved over time to accomodate larger genomes. The impetus for this software package was to be able to accurately and easily annotate a genome for submi

3 KB (375 words) - 16:51, 15 August 2022
BayArea
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 15:02, 10 June 2022
Test
[[Category:Software]][[Category:shell]]

2 KB (229 words) - 21:29, 6 December 2019
RFMIX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 14:01, 11 June 2020
Eukulele
[[Category:Software]][[Category:Alignment]][[Category:Annotation]][[Category:Biology]][[Categor The software includes four major features:

4 KB (453 words) - 22:12, 8 March 2024
BBMap
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

3 KB (349 words) - 17:55, 10 June 2022
PhyloParser
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 18:17, 21 August 2022
OrganellePBA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 21:22, 6 December 2019
Asap
[[Category:Software]][[Category:Visualization]][[Category:Biology]]

3 KB (295 words) - 17:29, 9 June 2022
Fastchaos
[[Category:Software]][[Category:Sequencing]]

2 KB (243 words) - 14:57, 29 July 2022
StringMLST
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (292 words) - 20:45, 12 August 2022
LncScore
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (308 words) - 21:21, 6 December 2019
Clview
[[Category:Software]][[Category:Biology]]

2 KB (252 words) - 13:48, 15 August 2022
CANVAS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:23, 26 August 2020
Category:Library
[[Category:Software]] Libraries available for use by other software and for development.

87 members (0 subcategories, 0 files) - 04:37, 29 June 2012
CRISPRCasFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 21:11, 6 December 2019
RaGOO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
Gblocks
[[Category:Software]][[Category:Biology]]

3 KB (441 words) - 13:56, 13 June 2022
IVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (300 words) - 16:06, 7 December 2021
LongRanger
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|https://support.10xgenomics.com/genome-exome/software/pipelines/latest/installation}}

2 KB (247 words) - 14:42, 10 June 2022
Bzip2
[[Category:Software]][[Category:Utility]][[Category:Library]]

2 KB (289 words) - 13:16, 15 August 2022
Draft:UFRC Help and Documentation Testx
| style="width: 7%; vertical-align: top" | [[Image:Software.png|frameless|upright=0.2]] ...padding-left: 10px" | <h1 style="border: 0; margin: 0 0 3px 0; padding: 0">SOFTWARE AND REFERENCE DATA</h1>

5 KB (581 words) - 14:05, 30 March 2023
Fast-gep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 15:46, 22 July 2022
Amphora2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.

3 KB (333 words) - 17:35, 10 June 2022
LoFreq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
PROJ
[[Category:Software]][[Category: Library]][[Category: Geospatial]]

2 KB (240 words) - 20:26, 24 August 2022
GTAHunter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 16:39, 27 May 2022
SHAPEIT4
[[Category:Software]]

5 KB (617 words) - 19:22, 14 December 2022
STAR-Fusion
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (306 words) - 16:02, 22 August 2022
Pascal
[[Category:Software]][[Category:Compiler]][[Category:Programming]]

3 KB (303 words) - 20:44, 15 August 2022
FcGENE
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]][[Category:Genomics]]

3 KB (326 words) - 16:38, 15 August 2022
ArrayFire
[[Category:Software]][[Category:Math]]

3 KB (315 words) - 14:52, 12 August 2022
NpScarf
[[Category:Software]][[Category:Phylogenetics]]

3 KB (326 words) - 14:29, 4 September 2020
Category:Applications
#REDIRECT [[Category:Software]]

0 members (0 subcategories, 0 files) - 17:26, 3 June 2022
Category:Data Science
[[Category:Software]][[Category:Data]]

40 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Trinotate
[[Category:Software]][[Category:Biology]] Additional software included in this module:

3 KB (344 words) - 20:29, 7 December 2023
Metabolic
[[Category:Software]] This software enables the prediction of metabolic and biogeochemical functional trait pro

3 KB (304 words) - 19:26, 18 August 2022
Bsoft
[[Category:Software]][[Category:Biology]][[Category:Image Processing]] Bsoft is a collection of programs and a platform for development of software for image and molecular processing in structural biology. Problems in struc

2 KB (297 words) - 13:14, 15 August 2022
Ghostscript
[[Category:Software]][[Category:Documentation]]

2 KB (254 words) - 17:08, 15 August 2022
Taiyaki
[[Category:Software]][[Category:Phylogenetics]] Taiyaki is research software for training models for basecalling Oxford Nanopore reads.

2 KB (240 words) - 18:58, 1 June 2022
CNVkit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 13:50, 15 August 2022
Sc-im
[[Category:Software]][[Category:Visualization]][[Category:Utility]]

2 KB (272 words) - 22:07, 21 August 2022
BinPacker
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...ur data and could explain all observed splicing events of each locus. This software is free to use, modify, redistribute without any restrictions, except inclu

3 KB (365 words) - 12:53, 15 August 2022
NCBI BLAST+
[[Category:Software]][[Category:biology]]

3 KB (344 words) - 19:55, 12 August 2022
FLASh
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://ccb.jhu.edu/software/FLASH/}}

2 KB (297 words) - 16:44, 15 August 2022
INDELible
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/indelible/}}

3 KB (384 words) - 13:34, 28 June 2021
Category:Math
[[Category:Software]]

64 members (1 subcategory, 0 files) - 21:45, 24 October 2022
Musket
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (351 words) - 13:44, 19 August 2022
Primer3
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (294 words) - 20:26, 12 August 2022
Nullarbor
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 19:38, 31 May 2022
Deepsig
[[Category:Software]][[Category:Biology]]

2 KB (266 words) - 04:24, 6 December 2022
Dragonflye
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]] https://github.com/rpetit3/dragonflye#software-included-19

2 KB (283 words) - 20:18, 12 April 2022
SALSA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (269 words) - 20:11, 24 August 2022
MPB
[[Category:Software]][[Category:Library]][[Category:Math]] MPB is a free and open-source software package for computing the band structures, or dispersion relations, and ele

3 KB (344 words) - 21:21, 6 December 2019
Proovread
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (269 words) - 20:27, 12 August 2022
SRAssembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (381 words) - 15:33, 27 May 2022
VMD
[[Category:Software]][[Category:visualization]][[Category:animation]][[Category:Graphics]] If 3D visualization is required you will need to run this software on a HWGUI partition.

3 KB (384 words) - 17:33, 22 August 2022
TreeTime
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 17:44, 2 November 2020
Csvpad
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|https://www.trustfm.net/software/utilities/CSVpad.php}}

2 KB (265 words) - 18:31, 1 March 2023
Assexon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 20:17, 10 February 2020
BinSanity
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (288 words) - 16:54, 10 June 2022
CAMP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (255 words) - 18:00, 23 May 2022
Template:Fileabug
...u/ Support System]. The support request tickets can be used for requesting software installation, finding a solution to a particular problem, or just asking a

273 bytes (40 words) - 18:12, 21 June 2017
IAnnotateSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Ge

3 KB (330 words) - 21:21, 6 December 2019
PyTorch
[[Category:Software]][[Category:Library]][[Category:Math]] ...neural networks and deep learning. PyTorch also has a large user base and software ecosystem.

5 KB (691 words) - 16:39, 14 December 2022
Minimap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (385 words) - 19:07, 10 June 2022
ParGenes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 13:31, 28 April 2021
ToFU2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] software. The isoform sequencing (Iso-Seq) application generates full-length

3 KB (398 words) - 16:38, 22 August 2022
Bioawk
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 12:54, 15 August 2022
Mvftools
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 13:58, 30 April 2020
SMC++
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

2 KB (268 words) - 23:52, 21 August 2022
Apptests
[[Category:Software]]

3 KB (331 words) - 20:52, 1 November 2023
MUMmer
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (393 words) - 13:39, 19 August 2022
Multimatch-gaze
[[Category:Software]][[Category:Math]][[Category:Data_Science]]

3 KB (318 words) - 19:07, 16 May 2023
WIsH
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 21:29, 6 December 2019
HapCompass
[[Category:Software]][[Category:Genomics]][[Category:NGS]]

2 KB (287 words) - 18:13, 15 August 2022
Pvconv
[[Category:Software]]

2 KB (265 words) - 21:12, 24 October 2022
Tcllib
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.tcl.tk/software/tcllib/}}

2 KB (273 words) - 16:12, 10 June 2022
Sparsehash
[[Category:Software]][[Category:web]][[Category:programming]]

3 KB (322 words) - 18:02, 15 August 2022
Dancemapper
[[Category:Software]][[Category:Machine Learning]]

2 KB (252 words) - 22:13, 6 March 2023
Imoka
iMOKA is a software that enables a comprehensive analysis of sequencing data Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to analyze large collections of sequencing data. Genome Biol 21, 261 (2020)

3 KB (346 words) - 17:07, 27 May 2022
Pypaftol
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

3 KB (307 words) - 14:11, 9 April 2024
GenomicConsensus
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (256 words) - 15:05, 10 June 2022
SExtractor
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:url|https://www.astromatic.net/software/sextractor}}

2 KB (281 words) - 21:24, 6 December 2019
DRep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
SIPeS
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

3 KB (327 words) - 20:41, 12 August 2022
Vermouth-martinize
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:21, 1 November 2021
SeSiMCMC
[[Category:Software]][[Category:Sequencing]]

3 KB (299 words) - 22:41, 21 August 2022
Rainbow
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (254 words) - 21:24, 6 December 2019
ARC
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...and 2) reduce reference bias as compared to mapping based approaches. The software is designed to work in situations where a whole-genome assembly is not the

3 KB (430 words) - 14:32, 12 August 2022
Connectomemapper3
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 13:55, 15 August 2022
Maq
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (377 words) - 19:47, 12 August 2022
Photutils
[[Category:Software]][[Category:Astronomy]]

2 KB (271 words) - 13:11, 6 June 2022
SequelQC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (280 words) - 21:24, 6 December 2019
Freesasa
[[Category:Software]][[Category:biology]][[Category:Molecular Dynamics]]

2 KB (276 words) - 16:49, 15 August 2022
Nanocomp
[[Category:Software]][[Category:programming]][[Category:sequencing]]

2 KB (282 words) - 12:22, 26 August 2022
GenomeTools
[[Category:Software]][[Category:Biology]]

2 KB (266 words) - 18:58, 12 August 2022
DISCOVAR de novo
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:url|https://software.broadinstitute.org/software/discovar/blog/?page_id=14}}

3 KB (326 words) - 14:41, 15 August 2022
DDSCAT
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|}} 

2 KB (326 words) - 14:30, 15 August 2022
GenomicNeuralnet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:09, 27 August 2020
AMBER
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

5 KB (736 words) - 20:09, 5 February 2024
EpiNano
[[Category:Software]][[Category:Biology]][[Category: NGS]]

2 KB (241 words) - 18:35, 21 July 2022
POV-Ray
[[Category:Software]] ...uter graphics. POV-Ray is Free Software (as per the definition of the Free Software Foundation) as its source code is licensed under the Affero General Public

2 KB (269 words) - 19:17, 27 May 2022
Haphpipe
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (405 words) - 16:40, 14 March 2023
Subread
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Variant Calling]]

3 KB (315 words) - 12:57, 15 August 2022
PCRE
[[Category:Software]][[Category:Programming]][[Category:library]] ...ar expression API. The PCRE library is free, even for building proprietary software.

3 KB (307 words) - 12:10, 26 August 2022
Globus
[[Category:Software]][[Category:File Management]] ...h [https://www.globus.org/globus-connect-personal Globus Connect Personal] software they can use to set up a personal collection on their computing device (Win

11 KB (1,849 words) - 14:14, 31 January 2024
PyVCF
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (236 words) - 20:08, 21 August 2022
Vg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (299 words) - 14:42, 4 September 2020
ESPRESSO
[[Category:Software]][[Category:Modeling]][[Category:Chemistry]] ...seudopotentials (both norm-conserving and ultrasoft)." It is a open-source software and developed by join efforts of the DEMOCRITOS National Simulation Center(

2 KB (254 words) - 20:22, 8 November 2022
Medaka
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (290 words) - 14:37, 21 August 2023
Ferret
[[Category:Software]][[Category: Geospatial]][[Category:Climate]][[Category:Visualization]][[Ca |{{#vardefine:exe|}} 

3 KB (359 words) - 20:26, 24 August 2022
Tapestri
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 19:07, 1 June 2022
Category:Machine Learning
[[Category:Software]]

42 members (0 subcategories, 0 files) - 21:45, 24 October 2022
Halla
[[Category:Software]][[Category:Phylogenetics]]

3 KB (367 words) - 13:57, 25 March 2022
GDC-Client
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (311 words) - 18:57, 12 August 2022
HYPRE
[[Category:Software]][[Category:math]]

2 KB (251 words) - 18:38, 15 August 2022
MP-EST
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

4 KB (489 words) - 12:01, 19 August 2022
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
Sweed
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (234 words) - 21:24, 6 December 2019
Bamsurgeon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (249 words) - 15:29, 22 September 2020
MGERT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 14:20, 15 September 2020
Clairvoyante
[[Category:Software]][[Category:Phylogenetics]]

4 KB (453 words) - 13:39, 15 August 2022
LillyMol
[[Category:Software]]

2 KB (236 words) - 14:39, 27 January 2023
Structure threader
[[Category:Software]] ...parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.

3 KB (342 words) - 18:56, 3 June 2022
Blast
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (402 words) - 18:17, 12 August 2022
MOSAIK
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|1}} 

3 KB (414 words) - 11:59, 19 August 2022
EXpress
[[Category:Software]][[Category:Biology]][[Category:NGS]] This module enables the use of the eXpress software

3 KB (383 words) - 18:53, 12 August 2022
SODA
[[Category:Software]]

2 KB (287 words) - 14:06, 29 March 2021
Mmaction2
[[Category:Software]][[Category:Machine Learning]][[Category:Visualization]]

2 KB (277 words) - 19:16, 6 June 2023
PhaME
[[Category:Software]][[Category:phylogenetics]]

2 KB (287 words) - 14:18, 9 March 2020
Randfold
[[Category:Software]][[Category:Biology]]

2 KB (262 words) - 21:29, 21 August 2022
FastPlast
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 20:23, 23 May 2022
Tophat
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (366 words) - 16:39, 22 August 2022
Gurobi
[[Category:Software]][[Category:Math]][[Category:Programming]]

2 KB (269 words) - 12:22, 26 August 2022
MapThin
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 21:21, 6 December 2019
ASTRAL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

3 KB (415 words) - 15:08, 12 August 2022
NextDenovo
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 18:03, 10 May 2021
Desmond
[[Category:Software]][[Category:Biology]]

2 KB (256 words) - 20:07, 6 April 2023
OrthoFiller
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 20:02, 31 May 2022
NanoCount
[[Category:Software]][[Category:Phylogenetics]]

2 KB (268 words) - 20:28, 14 May 2020
Pbpigeon
[[Category:Software]][Category:Biology]]

2 KB (275 words) - 22:37, 21 January 2024
FASTA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (320 words) - 18:54, 12 August 2022
Mlcoalsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...rl|https://bioinformatics.cragenomica.es/numgenomics/people/sebas/software/software.html}}

3 KB (324 words) - 21:22, 6 December 2019
PsRobot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 17:12, 1 June 2022
Parallel
[[Category:Software]][[Category:Shell]][[Category:Workflow Automation]] |{{#vardefine:url|http://www.gnu.org/software/parallel/}}

3 KB (334 words) - 16:46, 21 August 2022
RepeatAnalysisTools
[[Category:Software]] @software{tange_2021_5013933,

4 KB (430 words) - 16:55, 15 December 2022
MixMHCpred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 18:34, 31 May 2022
Asset
[[Category:Software]]

2 KB (253 words) - 20:07, 15 June 2023
BPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software.html}}

2 KB (294 words) - 18:21, 12 August 2022
GTOOL
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html}}

3 KB (319 words) - 12:51, 10 September 2020
FAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (298 words) - 18:54, 12 August 2022
CNSpipeline
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:19, 6 December 2019
Bifrost
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:11, 6 December 2019
Probalign
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (349 words) - 19:36, 21 August 2022
Conefor
[[Category:Software]][[Category:Biology]] Conefor is a software package that allows quantifying the importance of habitat areas and links f

3 KB (303 words) - 14:33, 2 May 2023
4p
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]] 4P (Parallel Processing of Polymorphism Panels) is a software for computing

2 KB (285 words) - 20:36, 11 August 2022
Pindel
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (279 words) - 21:23, 6 December 2019
Mothur
[[Category:Software]][[Category:Biology]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (321 words) - 12:00, 19 August 2022
EAGLE
[[Category:Software]][[Category:Phylogenetics]] The Enhanced Artificial Genome Engine (EAGLE) software is designed to simulate the behaviour of Illumina's Next Generation Sequenc

2 KB (266 words) - 22:29, 26 August 2020
PerM
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:Mapping]] PerM is a software package which was designed to perform highly efficient genome scale alignme

3 KB (396 words) - 17:40, 21 August 2022
DeTiN
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (249 words) - 14:39, 15 August 2022
Hgtector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

2 KB (253 words) - 17:04, 10 October 2022
Bcl2fastq
[[Category:Software]][[Category:Biology]][[Category:NGS]] bcl2fastq conversion software can be used to both demultiplex data and

3 KB (328 words) - 18:12, 12 August 2022
VirSieve
[[Category:Software]] [[Category:Software]]

5 KB (639 words) - 18:59, 14 December 2022
MARK
[[Category:Software]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}

2 KB (329 words) - 18:22, 18 August 2022
Plinkseq
[[Category:Software]][[Category:Biology]][[Category:Library]]

2 KB (296 words) - 20:25, 12 August 2022
Maxima
[[Category:Software]][[Category:Math]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (298 words) - 21:21, 6 December 2019
HLAminer
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

4 KB (541 words) - 14:55, 14 December 2022
Garfield
[[Category:Software]][[Category:Genomics]]

3 KB (342 words) - 22:51, 30 November 2022
AlphaPulldown
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] If you use this software, please cite it along the dependencies it uses internally, at least:

3 KB (300 words) - 14:11, 10 July 2023
SNAPE-pooled
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (270 words) - 12:56, 15 August 2022
Osprey
[[Category:Software]][[Category:Spectroscopy]][[Category:Neuroscience]] Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo

2 KB (280 words) - 18:01, 19 August 2022
PyCharm
[[Category:Software]][[Category:Programming]]

2 KB (229 words) - 12:24, 26 August 2022
Ngstools
[[Category:Software]][[Category:biology]][[Category:NGS]]

5 KB (708 words) - 15:31, 14 December 2022
Bcftools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 19:09, 11 April 2024
GenotypeHarmonizer
[[Category:Software]][[Category:Biology]]

2 KB (286 words) - 19:01, 12 August 2022
EQtlBma
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (254 words) - 18:52, 12 August 2022
Metacrast
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 17:58, 27 May 2022
TREEPUZZLE
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (450 words) - 19:31, 10 June 2022
Mirdeep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 18:00, 27 May 2022
Wine
[[Category:Software]][[Category:Linux]][[Category:Utility]]

3 KB (367 words) - 17:43, 22 August 2022
Nvhpc
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Library]][[Categor

3 KB (334 words) - 17:24, 19 August 2022
PHLAWD
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (232 words) - 18:13, 21 August 2022
Genmap
[[Category:Software]]

2 KB (256 words) - 21:20, 17 May 2023
Mash
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (238 words) - 14:56, 10 June 2022
Msvar
[[Category:Software]][[Category:Biology]][[Category:Genomics]] This module enables the use of the Mark Beaumont's msvar software for statistical inference in population genetics and evolutionary biology.

2 KB (260 words) - 13:35, 19 August 2022
Slicer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...le platforms, including Windows, Linux and Mac Os X. 3DSlicer is a desktop software used in medical and biomedical imaging. It serves as a development platform

3 KB (346 words) - 15:42, 8 April 2024
TRUST4
[[Category:Software]][[Category:Phylogenetics]]

3 KB (314 words) - 20:12, 8 February 2021
Trvz
[[Category:Software]]

2 KB (273 words) - 14:46, 28 July 2023
Libint
[[Category:Software]][[Category:Library]]

2 KB (252 words) - 15:41, 6 June 2022
Trimmomatic
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (522 words) - 20:52, 12 August 2022
Deepfri
[[Category:Software]][[Category:Machine Learning]][[Category:Biology]]

2 KB (290 words) - 19:30, 10 March 2023
QMCPACK
[[Category:Software]][[Category:Library]]

2 KB (259 words) - 21:24, 6 December 2019
Tellseq
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.universalsequencing.com/software}}

2 KB (263 words) - 20:52, 18 May 2022
Add New App Page
...app module name e.g. "foo" into the text box and click on the "Create new software page" button. Edit the resulting page as necessary.

245 bytes (44 words) - 17:34, 3 June 2022
Mg-rast
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (267 words) - 21:21, 6 December 2019
PBJelly
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (309 words) - 17:07, 21 August 2022
Wengan
[[Category:Software]]

4 KB (472 words) - 20:55, 12 August 2022
Category:Healthcare
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
PRINSEQ++
[[Category:Software]][[Category:phylogenetics]]

2 KB (298 words) - 18:11, 15 April 2020
PLUMED
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

2 KB (290 words) - 15:30, 19 August 2022
Mrtrix3tissue
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 16:51, 30 January 2023
ALLPATHS-LG
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/allpaths-lg/blog/}}

2 KB (299 words) - 12:36, 12 August 2022
Nanofilt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 13:48, 19 August 2022
Magpurify
[[Category:Software]] Each module in the software package was designed to be highly specific. This means that not all contami

3 KB (332 words) - 17:35, 24 May 2023
MELTING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] MELTING is a software to compute, for a nucleic acid duplex, the enthalpy and the entropy of the

3 KB (306 words) - 19:50, 12 August 2022
BERTopic
[[Category:Software]][[Category:Machine Learning]]

2 KB (283 words) - 14:00, 27 May 2022
EGene-MVN
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (327 words) - 14:57, 15 August 2022
Tecplot 360 EX
[[Category:Software]][[Category:Math]][[Category:Animation]][[Category:Fluid Dynamics]][[Catego

3 KB (337 words) - 14:56, 19 August 2022
NECAT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 13:32, 23 June 2020
Hiphase
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (337 words) - 20:21, 19 March 2024
SIGffRid
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 18:17, 1 June 2022
Alphaimpute
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://alphagenes.roslin.ed.ac.uk/wp/software/alphaimpute/}}

3 KB (337 words) - 12:37, 12 August 2022
NtEdit
[[Category:Software]][[Category:Phylogenetics]]

3 KB (316 words) - 21:23, 6 December 2019
Deepcoil
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (241 words) - 18:49, 12 August 2022
AI Examples
...les for computer vision and natural language processing tasks using the AI software stacks on HiPerGator. Users may copy these examples to their own space, add ...MultiNode MONAI] || distributed compute, computer vision || Use the MONAI software to train an image classifier on multiple nodes.

3 KB (367 words) - 18:50, 30 August 2022
SNP-Pipeline
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (306 words) - 17:00, 10 June 2022
Rrnaselector
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (304 words) - 21:24, 6 December 2019
PAML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/paml.html}}

3 KB (367 words) - 20:12, 12 August 2022
CasOFFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 21:58, 26 August 2020
MOCCASIN
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 18:59, 31 May 2022
Cgmaptools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 21:01, 6 December 2019
GPhoCS
[[Category:Software]][[Category:Phylogenetics]] G-PhoCS is a software package for inferring ancestral population sizes, population divergence tim

3 KB (300 words) - 21:20, 6 December 2019
Synima
[[Category:Software]][[Category:Phylogenetics]]

3 KB (313 words) - 20:34, 27 May 2022
TDNAscan
[[Category:Software]][[Category:Phylogenetics]] TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions

2 KB (278 words) - 18:28, 7 December 2021
BloomTree
[[Category:Software]][[Category:Data Mining]]

3 KB (302 words) - 16:49, 10 June 2022
Bxh xcede tools
[[Category:Software]][[Category:Biology]]

2 KB (291 words) - 18:22, 12 August 2022
Pycharm-pro
[[Category:Software]]

2 KB (271 words) - 15:56, 27 June 2023
Applications FAQ
...n package from a binary archive (wheel) that was built on a system against software libraries that are not compatible with HiPerGator. A typical error message > devtools::install_github("author/software")

4 KB (579 words) - 20:42, 16 October 2023
Example
[[Category:Software]] The software foobarbaz is a really wonderful tool that lets you tie your shoelaces remot

3 KB (370 words) - 02:39, 24 May 2023
Qsiprep
[[Category:Software]] ...r processing diffusion-weighted MRI (dMRI) data. The main features of this software are:

3 KB (324 words) - 16:13, 17 October 2023
BRATNextGen
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BRAT-NextGen/}}

2 KB (268 words) - 13:10, 15 August 2022
IMPUTE5
[[Category:Software]] |{{#vardefine:url|https://jmarchini.org/software/#impute-5}}

3 KB (351 words) - 18:49, 15 August 2022
Dretools
[[Category:Software]] DRETools is a command-line software package for studying differential RNA editing.

2 KB (226 words) - 16:05, 22 May 2023
GDB
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|https://www.gnu.org/software/gdb/}}

4 KB (494 words) - 16:13, 9 January 2023
MZMine
[[Category:Software]][[Category:Spectroscopy]][[Category:Biology]]

3 KB (417 words) - 13:28, 7 July 2023
Langdetect
[[Category:Software]]

2 KB (242 words) - 17:01, 23 August 2022
JCVI
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 14:30, 4 September 2020
Category:Interface
[[Category:Software]]

2 members (2 subcategories, 0 files) - 18:02, 26 September 2022
Category:Pipeline
[[Category:Biology]][[Category:Software]]

8 members (0 subcategories, 0 files) - 15:27, 23 August 2022
PHYLIP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:42, 10 June 2022
Blink
[[Category:Software]][[Category:Genomics‏‎]]

2 KB (267 words) - 13:03, 15 August 2022
FastSpar
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (283 words) - 15:26, 15 August 2022
Ngs-bits
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (296 words) - 16:57, 10 June 2022
Tandem-Genotypes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:01, 1 June 2022
LDhat
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:09, 10 June 2022
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
SICER
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]] |{{#vardefine:url|http://home.gwu.edu/~wpeng/Software.htm}}

2 KB (279 words) - 16:35, 10 June 2022
Ncbi-vdb
[[Category:Software]][[Category:NGS]]

3 KB (428 words) - 14:33, 19 August 2022
Trilinos Configuration
[[Category:Software]]

2 KB (246 words) - 20:40, 21 June 2017
SpeedSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 22:29, 9 December 2020
Category:Utility
[[Category:Software]]

33 members (0 subcategories, 0 files) - 21:45, 24 October 2022
NanoSV
[[Category:Software]][[Category:Biology]][[Category:Genomics]] NanoSV is a software package that can be used to identify structural genomic variations in long-

2 KB (282 words) - 14:23, 19 August 2022
JModelTest
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (431 words) - 19:27, 12 August 2022
PacMAP
[[Category:Software]][[Category:Genomics]]

3 KB (304 words) - 18:24, 11 February 2023
IMa2p
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 21:21, 6 December 2019
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
VCF-kit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 17:26, 22 August 2022
Lua
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (323 words) - 20:21, 15 August 2022
ATLAS
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}

3 KB (317 words) - 15:19, 12 August 2022
Bamtofastq
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 13:56, 8 March 2021
Baypass
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www1.montpellier.inra.fr/CBGP/software/baypass/}}

3 KB (355 words) - 21:05, 6 December 2019
PolyGembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:45, 3 November 2020
Pymesh
[[Category:Software]]

2 KB (271 words) - 16:09, 9 March 2023
Deprecation
[[Category:Software]] ...databases that are going to be deprecated. The modules are removed and the software is put into the REMOVE directories to be removed 6 months after being added

9 KB (946 words) - 22:32, 15 December 2022
NEURON
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

2 KB (249 words) - 14:58, 10 June 2022
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
BppSuite
[[Category:Software]][[Category:Genomics]]

2 KB (248 words) - 15:37, 9 December 2022
Csubst
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (380 words) - 22:12, 26 July 2023
Tigmint
[[Category:Software]][[Category:Phylogenetics]]

3 KB (370 words) - 21:29, 6 December 2019
ChromEvol
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (297 words) - 13:34, 15 August 2022
Trim isoseq polya
[[Category:Software]]

2 KB (298 words) - 15:04, 19 August 2022
Singularity
[[Category:Software]][[Category:Workflow Automation]]

3 KB (410 words) - 21:30, 6 February 2023
Biolite
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Variant Calling]]

3 KB (362 words) - 12:54, 15 August 2022
LSD2
[[Category:Software]][[Category:Phylogenetics]] If you use this software, please cite: “Fast dating using least-squares criteria and algorithms”

2 KB (269 words) - 20:45, 30 April 2020
IGV
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] |{{#vardefine:url|http://software.broadinstitute.org/software/igv/}}

2 KB (276 words) - 18:42, 15 August 2022
Dynasor
[[Category:Software]][[Category:Molecular_Dynamics]]

3 KB (416 words) - 16:47, 27 November 2023
Blast2GO
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

6 KB (920 words) - 14:08, 16 March 2023
Fast-Plast
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

4 KB (487 words) - 21:20, 6 December 2019
SiLiX
[[Category:Software]][[Category:Phylogenetics]] The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new alg

3 KB (287 words) - 21:24, 6 December 2019
Giotto
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 19:31, 26 May 2022
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
Matlab
[[Category:Software]][[Category:Language]][[Category:Math]] |{{#vardefine:exe|1}} 

9 KB (1,361 words) - 16:06, 28 November 2023
Spark
[[Category:Software]][[Category:Utility]]

11 KB (1,573 words) - 22:01, 15 December 2022
PyBSASeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (235 words) - 17:14, 1 June 2022
EVidenceModeler
[[Category:Software]][[Category:Phylogenetics]] The EVidenceModeler (aka EVM) software combines ab intio gene predictions and protein and transcript alignments in

3 KB (311 words) - 14:59, 27 July 2020
Vfuparr
[[Category:Software]][[Category:Sequencing]][[Category:Biology]] ...LURM systems, this workflow allows users to easily incorporate any docking software of their choice, ensuring maximum flexibility.

3 KB (392 words) - 20:35, 9 April 2024
MITE-Hunter
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (250 words) - 15:05, 10 June 2022
SUPPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (328 words) - 21:24, 6 December 2019
ElPrep
[[Category:Software]][[Category:Phylogenetics]]

3 KB (345 words) - 21:20, 6 December 2019
SOAPsplice
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (315 words) - 00:06, 22 August 2022
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
PyHIST
[[Category:Software]]

4 KB (567 words) - 16:12, 22 December 2022
R8s
[[Category:Software]][[Category:phylogenetics]]

3 KB (456 words) - 21:24, 6 December 2019
Trilinos
[[Category:Software]][[Category:Math]] |{{#vardefine:exe|}} 

2 KB (294 words) - 15:23, 19 August 2022
ConPADE
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 22:14, 26 August 2020
SOAPdenovo-Trans
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (283 words) - 00:05, 22 August 2022
Gscripts
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 17:25, 15 August 2022
OpenPIV-python
[[Category:Software]][[Category:Programming]][[Category:Imaging]] OpenPIV is open source Particle Image Velocimetry analysis software.

2 KB (291 words) - 12:23, 26 August 2022
Mobsuite
[[Category:Software]] Software tools for clustering, reconstruction and typing of plasmids from draft asse

3 KB (340 words) - 20:03, 10 October 2022
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
MHAP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (270 words) - 16:15, 10 June 2022
Primus
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 21:22, 6 December 2019
Velocyto
[[Category:software]][[Category:biology]][[Category:sequencing]]

2 KB (275 words) - 00:33, 25 May 2023
Gepard
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 22:10, 27 August 2020
Resistify
[[Category:Software]]

2 KB (264 words) - 16:44, 6 February 2024
Hpsandbox
[[Category:Software]]

2 KB (264 words) - 22:27, 1 February 2023
Ensembl Tools
[[Category:Software]][[Category:Biology]][[Category:Biology]]

3 KB (333 words) - 18:52, 12 August 2022
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
MAGeCKFlute
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 20:24, 15 August 2022
PCIT
[[Category:Software]][[Category:Biology]]

3 KB (302 words) - 20:19, 12 August 2022
Quickquartet
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:02, 21 August 2022
BSseeker2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (238 words) - 14:40, 10 June 2022
Vcontact
[[Category:Software]][[Category:Phylogenetics]]

3 KB (358 words) - 20:04, 27 May 2022
LAMMPS
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|1}} 

5 KB (731 words) - 20:30, 6 April 2024
Megalodon
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 22:24, 8 September 2020
CGATools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 13:26, 15 August 2022
ViewBS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (384 words) - 17:30, 22 August 2022
Category:Geospatial
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:20, 7 July 2017
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
Category:Image Processing
[[Category:Software]]

14 members (0 subcategories, 0 files) - 17:22, 3 June 2022
Icommands
[[Category:Software]][[Category:Utility]]

3 KB (388 words) - 18:39, 15 August 2022
ParaView
[[Category:Software]][[Category:Data Science]]

3 KB (416 words) - 21:28, 13 October 2023
QUIP
[[Category:Software]][[Category:Phylogenetics]] ...and is also able to call external packages, and serve as plugins to other software such as LAMMPS, CP2K and also the python framework ASE. Various hybrid comb

3 KB (315 words) - 21:02, 21 August 2022
MetaBCC-LR
[[Category:Software]]

6 KB (774 words) - 14:28, 15 December 2022
Liftoff
[[Category:Software]][[Category:Phylogenetics]]

3 KB (399 words) - 13:14, 23 September 2020
MGEScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (299 words) - 16:58, 10 June 2022
LAStools
[[Category:Software]][[Category:Imaging]]

2 KB (292 words) - 19:37, 15 August 2022
Category:Structure
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:32, 6 June 2022
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
Biology
...ends on the stability of the four main corner stones - hardware resources, software availability and support, training and documentation, and direct consulting ==Software==

4 KB (665 words) - 21:23, 14 December 2022
MOOSE
[[Category:Software]][[Category:Physics]][[Category:Simulation]]

3 KB (338 words) - 15:46, 13 August 2020
Magicblast
[[Category:Software]]

2 KB (304 words) - 16:29, 6 October 2022
Minigraph
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 18:08, 31 March 2021
Vcftools
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (400 words) - 20:55, 12 August 2022
Maskrc-svg
[[Category:Software]][[Category:Genomics]]

2 KB (255 words) - 20:32, 26 January 2023
RNAstructure
[[Category:Software]]

3 KB (359 words) - 21:58, 21 August 2022
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
ABySS
[[Category:Software]][[Category:Biology]][[Category:De Novo]] |{{#vardefine:url|http://www.bcgsc.ca/platform/bioinfo/software/abyss}}

2 KB (315 words) - 16:17, 19 August 2022
Kaiju
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (283 words) - 21:21, 6 December 2019
Ucsc-fafiltern
[[Category:phylogenetics]][[Category:Software]]

2 KB (244 words) - 17:11, 22 August 2022
KING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] [http://people.virginia.edu/~wc9c/KING/manual.html Software Manual in HTML format]

3 KB (305 words) - 19:28, 12 August 2022
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
Opennmt-py
[[Category:Software]][[Category:Language]][[Category:Machine_Learning]]

2 KB (272 words) - 20:14, 6 April 2023
TWINSCAN
[[Category:Software]][[Category:biology]][[Category:genomics]] |{{#vardefine:url|http://mblab.wustl.edu/software.html#twinscanLink}}

3 KB (386 words) - 20:20, 27 May 2022
RiboTaper
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/}}

3 KB (293 words) - 13:48, 20 May 2020
Rnaeditingindexer
[[Category:Software]][[Category:Biology]]

2 KB (239 words) - 22:53, 21 January 2024
PASA
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

4 KB (687 words) - 21:04, 4 January 2023
Rcorrector
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 13:58, 6 June 2022
Genrich
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 21:21, 6 December 2019
DSSAT
[[Category:Software]] is a software application program that comprises crop simulation

3 KB (371 words) - 14:52, 15 August 2022
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
MMvec
[[Category:Software]][[Category:Chemistry]]

2 KB (238 words) - 20:51, 18 August 2022
Sdsl
[[Category:Software]][[Category:library]][[Category:compiler]]

3 KB (350 words) - 17:47, 15 August 2022
SUNDIALS
[[Category:Software]][[Category:Math]] ...Differential/Algebraic Equation Solvers," ACM Transactions on Mathematical Software, 31(3), pp. 363-396, 2005. Also available as LLNL technical report UCRL-JP-

3 KB (364 words) - 15:25, 19 August 2022
RepeatSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 15:29, 27 May 2022
Platon
[[Category:Software]] <code>Robertson J., Nash J. H. E. (2018) MOB-suite: Software Tools for Clustering, Reconstruction and Typing of Plasmids From Draft Asse

4 KB (437 words) - 17:14, 14 December 2022
MiRBShunter
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 21:21, 6 December 2019
Graph annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 21:20, 6 December 2019
GenSel
[[Category:Software]][[Category:Genomics]]

2 KB (271 words) - 17:03, 15 August 2022
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
SplAdder
[[Category:Software]][[Category:Phylogenetics]] ...lternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized format

3 KB (304 words) - 15:50, 22 August 2022
Captus
[[Category:Software]]

3 KB (321 words) - 16:36, 16 November 2022
Esmf
[[Category:Software]][[Category:geospatial]] The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeli

2 KB (256 words) - 20:59, 22 September 2022
Eagle-rc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (270 words) - 22:30, 26 August 2020
SIFT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 20:40, 12 August 2022
Ngscheckmate
[[Category:Software]][[Category:Phylogenetics]] NGSCheckMate is a software package for identifying next generation sequencing (NGS) data files from th

3 KB (390 words) - 18:12, 27 May 2022
PGAP
[[Category:Software]]

3 KB (393 words) - 14:29, 6 July 2022
Python Modules
[[Category:Software]]

415 bytes (50 words) - 20:40, 5 April 2018
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
Category:Astronomy
[[Category:Software]]

9 members (0 subcategories, 0 files) - 16:17, 3 June 2022
Fdupes
[[Category:Software]][[Category:File Management]]

2 KB (241 words) - 13:53, 21 October 2022
PIA2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 21:22, 6 December 2019
HmmCleaner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:25, 27 August 2020
WDSSII
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (299 words) - 20:05, 24 August 2022
TRITONSERVER
[[Category:Software]][[Category:Machine Learning]]

2 KB (298 words) - 20:06, 21 August 2022
Merlin
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (264 words) - 12:56, 15 August 2022
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
PyCogent
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (275 words) - 17:20, 1 June 2022
VarSimLab
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Simulation]]

3 KB (420 words) - 17:24, 22 August 2022
Jellyfish
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 19:27, 12 August 2022
Phyx
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 18:23, 21 August 2022
YAHA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (320 words) - 20:56, 12 August 2022
UFCG
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (431 words) - 17:41, 20 September 2023
Supercell
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (281 words) - 16:55, 10 June 2022
Mireap
[[Category:Software]][[Category:Biology]]

2 KB (258 words) - 20:43, 18 August 2022
CASAVA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.illumina.com/software/genome_analyzer_software.ilmn}}

3 KB (340 words) - 18:23, 12 August 2022
Raven
[[Category:Software]][[Category:assembly]]

2 KB (284 words) - 21:14, 20 November 2023
Kallisto
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (278 words) - 16:13, 10 June 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
FrameDP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (249 words) - 15:07, 10 June 2022
Juicer
[[Category:Software]][[Category:Genomics]]

3 KB (369 words) - 16:29, 15 October 2023
GraphViz
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...nd networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual inter

2 KB (276 words) - 19:03, 12 August 2022
Mapclassify
[[Category:Software]]

3 KB (314 words) - 18:21, 18 August 2022
Ms
[[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 12:30, 19 August 2022
HipSTR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (340 words) - 14:50, 1 October 2020
ANNOVAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

4 KB (545 words) - 14:16, 12 August 2022
Tax4Fun
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 18:29, 4 February 2020
NxTrim
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.

2 KB (273 words) - 20:08, 12 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
Talk:BioC Requirements Information Gathering
...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster

3 KB (493 words) - 21:42, 2 November 2011
MiniCaller
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (273 words) - 19:52, 12 August 2022
TrackTools
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}

2 KB (251 words) - 16:40, 22 August 2022
BayesTraits
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 17:49, 26 August 2022
Category:Fluid Dynamics
[[Category:Software]]

7 members (0 subcategories, 0 files) - 19:53, 22 August 2022
Phynd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 18:13, 15 April 2020
RTGTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 15:06, 10 June 2022
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
Structure
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (325 words) - 16:03, 22 August 2022
Porechop
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (294 words) - 21:23, 6 December 2019
AMICO
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

2 KB (247 words) - 12:40, 12 August 2022
UNAFold
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.

3 KB (359 words) - 20:53, 12 August 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Meta-Tissue
[[Category:Software]][[Category:Biology]][[Category:Genomics]] Meta-Tissue is a free software for identifying eQTLs from multiple tissues. It uses meta-analysis to combi

3 KB (328 words) - 19:24, 18 August 2022
Tcoffee
[[Category:Software]][[Category:Biology]]

2 KB (280 words) - 20:46, 12 August 2022
Finesse
[[Category:Software]][[Category:Simulation]] ...aussian beams can be used to model spatial effects. Finesse is open source software distributed for OSX, Linux, and Windows. It has benefited from years of emp

3 KB (347 words) - 00:01, 9 July 2020
Hificnv
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (292 words) - 20:23, 20 March 2024
Sim4Life
[[Category:Software]][[Category:Biology]][[Category:Simulation]]

2 KB (271 words) - 18:20, 1 June 2022
FEniCS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:20, 6 December 2019
Sourmash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 15:45, 22 August 2022
Pandaseq
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (239 words) - 18:08, 19 August 2022
Orthofisher
[[Category:Software]]

2 KB (264 words) - 15:04, 19 August 2022
ViennaRNA
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (396 words) - 19:08, 10 June 2022

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