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clipseqtools website  

CLIPSeqTools is a collection of command line applications used for the analysis of CLIP-Seq datasets. CLIP-Seq stands for UV cross-linking and immunoprecipitation coupled with high-throughput sequencing.

CLIPSeqTools has applications for a wide range of analyses that will give an in depth view of the analysed dataset. Examples of such analyses are: genome read coverage, distibution of reads on genic elements, motif enrichment, relative position of reads of two datasets, differential gene counts, etc).

Environment Modules

Run module spider clipseqtools to find out what environment modules are available for this application.

System Variables

  • HPC_CLIPSEQTOOLS_DIR - installation directory