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ldhat website  

LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.

Environment Modules

Run module spider ldhat to find out what environment modules are available for this application.

System Variables

  • HPC_LDHAT_DIR - installation directory

Additional Information

The following programs are included:

  • convert: Simple manipulation of DNA sequence data
  • pairwise: Parametric and nonparametric analyses of recombination
  • interval: Estimation of variable recombination rates
  • rhomap: Estimation of variable recombination rates in the presence of hotspots
  • fin: Simulation of genetic variation data in LDhat format