Search results

Magus
[[Category:Software]][[Category:Sequencing]][[Category:Alignment]]

3 KB (327 words) - 17:51, 16 March 2022
ZEO++
[[Category:Software]][[Category:Chemistry]] Zeo++ is a open source software for performing high-throughput geometry-based analysis of porous materials

3 KB (424 words) - 19:47, 27 May 2022
Velocyto
[[Category:software]][[Category:biology]][[Category:sequencing]]

2 KB (275 words) - 00:33, 25 May 2023
QAPA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 16:54, 15 January 2021
MCNPX
[[Category:Software]][[Category:Physics]]

2 KB (221 words) - 18:28, 18 August 2022
Cobra-tf
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (293 words) - 13:51, 15 August 2022
Bayenv
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (388 words) - 19:03, 10 June 2022
MCL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (372 words) - 18:28, 18 August 2022
Quickmerge
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 21:24, 6 December 2019
Ensembl Tools
[[Category:Software]][[Category:Biology]][[Category:Biology]]

3 KB (333 words) - 18:52, 12 August 2022
Polyply
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (286 words) - 20:48, 18 April 2022
CUBE
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:Compiler]] |{{#vardefine:url|http://www.scalasca.org/software/cube-4.x}}

3 KB (329 words) - 14:14, 15 August 2022
Quickquartet
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (317 words) - 21:02, 21 August 2022
AI Reference Datasets
You may need to use the full path /blue/data/ai for software applications to find the file.

2 KB (256 words) - 15:03, 28 September 2021
Category:Graphics
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:46, 10 August 2012
FLEXLm
[[Category:Software]][[Category:Utility]]

2 KB (263 words) - 16:46, 15 August 2022
Satsuma2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:10, 1 June 2022
Panaroo
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (289 words) - 19:33, 13 June 2023
Category:Language
[[Category:Software]]

22 members (0 subcategories, 0 files) - 15:37, 3 June 2022
LDhat
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:09, 10 June 2022
CellRanger-ATAC
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]] |{{#vardefine:url|https://support.10xgenomics.com/single-cell-atac/software/overview/welcome}}

2 KB (281 words) - 13:25, 15 August 2022
VAMPIR
[[Category:Software]][[Category:Performance Analysis]]

3 KB (321 words) - 17:22, 22 August 2022
Trilinos Configuration
[[Category:Software]]

2 KB (246 words) - 20:40, 21 June 2017
SCIrun
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.sci.utah.edu/cibc-software/scirun.html}}

3 KB (344 words) - 22:09, 21 August 2022
Amuse
[[Category:Software]][[Category:Astronomy]] AMUSE is an Astrophysical Multipurpose Software Environment. Within AMUSE different existing numerical codes are incorporat

2 KB (287 words) - 20:34, 15 August 2022
Knitro
[[Category:Software]][[Category:Math]]

2 KB (286 words) - 19:34, 15 August 2022
Iaps
[[Category:Software]]

2 KB (250 words) - 18:42, 8 February 2023
Coot
[[Category:Software]][[Category:Modeling]]

3 KB (300 words) - 21:17, 6 December 2019
Nubeamdedup
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 17:23, 19 August 2022
IMa2p
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 21:21, 6 December 2019
Ovito
[[Category:Software]][[Category:Programming]]

3 KB (333 words) - 15:29, 1 December 2023
Slurm-drmaa
[[Category:Software]][[Category:library]][[Category:Scheduler Apps]][[Category:Programming]] ..., portal developers and ISVs can use the same high-level API to link their software with different cluster/resource management systems.

3 KB (316 words) - 14:30, 11 July 2023
ATLAS
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:url|http://www.gnu.org/software/gsl}}

3 KB (317 words) - 15:19, 12 August 2022
Catch
[[Category:Software]]

3 KB (422 words) - 18:23, 12 August 2022
CASAVA
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://www.illumina.com/software/genome_analyzer_software.ilmn}}

3 KB (340 words) - 18:23, 12 August 2022
Mono
[[Category:Software]][[Category:Linux]][[Category:Programming]]

2 KB (289 words) - 17:41, 15 August 2022
FrameDP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (249 words) - 15:07, 10 June 2022
Platanus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (318 words) - 21:23, 6 December 2019
Nlr-annotator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 19:28, 31 May 2022
NEURON
[[Category:Software]][[Category:Biology]][[Category:Neuroscience]]

2 KB (249 words) - 14:58, 10 June 2022
Helixer
[[Category:Software]]

2 KB (254 words) - 17:38, 19 April 2024
Protobuf
[[Category:Software]][[Category:web]][[Category:library]]

2 KB (280 words) - 18:02, 15 August 2022
ChromEvol
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (297 words) - 13:34, 15 August 2022
MONAI label
[[Category:Software]][[Category:Healthcare]]

3 KB (377 words) - 11:56, 19 August 2022
ANNOVAR
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

4 KB (545 words) - 14:16, 12 August 2022
Bamaddrg
[[Category:Software]][[Category:Phylogenetics]]

2 KB (302 words) - 20:19, 19 October 2020
Talk:BioC Requirements Information Gathering
...rearely need jobs that run over a month. Between checkpointing and better software, most of the analyses that I've seen running over 30days on our lab cluster

3 KB (493 words) - 21:42, 2 November 2011
Saffrontree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (400 words) - 17:17, 31 May 2022
IsONclust
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 13:24, 19 October 2020
Deepvariant
[[Category:Software]]

3 KB (356 words) - 13:17, 16 April 2024
Fgbio
[[Category:Software]][[Category:Phylogenetics]]

2 KB (292 words) - 21:20, 6 December 2019
MongoDB
[[Category:Software]][[Category:Database]]

3 KB (340 words) - 19:22, 11 February 2021
Illumina-utils
[[Category:Software]][[Category:Phylogenetics]]

2 KB (295 words) - 18:43, 15 August 2022
FRAMA
[[Category:Software]][[Category:biology]]

2 KB (236 words) - 21:21, 6 December 2019
SURVIVOR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (296 words) - 21:24, 6 December 2019
DSSAT
[[Category:Software]] is a software application program that comprises crop simulation

3 KB (371 words) - 14:52, 15 August 2022
Faqcs
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (268 words) - 17:48, 18 May 2023
Stampy
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (327 words) - 20:45, 12 August 2022
SUNDIALS
[[Category:Software]][[Category:Math]] ...Differential/Algebraic Equation Solvers," ACM Transactions on Mathematical Software, 31(3), pp. 363-396, 2005. Also available as LLNL technical report UCRL-JP-

3 KB (364 words) - 15:25, 19 August 2022
Perl
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (811 words) - 17:56, 2 January 2023
Knime
[[Category:Software]] KNIME Analytics Platform is an open source software that allows users to access, blend, analyze, and visualize data, without an

3 KB (318 words) - 14:46, 9 June 2023
FFTW
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (223 words) - 16:41, 15 August 2022
Get homologues
[[Category:Software]][[Category:Biology]][[Category:Genomics]] An open-source software package that builds on popular orthology-calling approaches making highly c

3 KB (306 words) - 21:20, 6 December 2019
Disbatch
[[Category:Software]]

2 KB (246 words) - 15:19, 18 July 2023
GenSel
[[Category:Software]][[Category:Genomics]]

2 KB (271 words) - 17:03, 15 August 2022
Ldak
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] LDAK is a software package for analysing association study data.

2 KB (265 words) - 19:48, 15 August 2022
CMS
[[Category:Software]][[Category:Biology]]

3 KB (317 words) - 21:02, 6 December 2019
Esmf
[[Category:Software]][[Category:geospatial]] The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeli

2 KB (256 words) - 20:59, 22 September 2022
PBCCS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:07, 21 August 2022
QRNA
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://eddylab.org/software/qrna/}}

2 KB (251 words) - 17:39, 1 June 2022
Merqury
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 13:54, 12 August 2020
Tensorboard
...separate workload within a HiPerGator Desktop session. Many neural network software frameworks are able to stream training data to a TensorBoard log file.

2 KB (231 words) - 21:03, 12 December 2023
Infernal
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (305 words) - 19:31, 24 August 2022
Lucene
[[Category:Software]][[Category:Programming]][[Category:Search]]

2 KB (262 words) - 12:11, 26 August 2022
Python Modules
[[Category:Software]]

415 bytes (50 words) - 20:40, 5 April 2018
Circompara2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:36, 1 April 2022
Wise
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (321 words) - 21:29, 6 December 2019
PIA2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 21:22, 6 December 2019
Vamb
[[Category:Software]]

3 KB (302 words) - 18:59, 1 February 2021
Training
===Intel Software Tools Technical Webinar Series=== ...n information is available [http://software.intel.com/en-us/articles/intel-software-tools-technical-webinar-series here].

3 KB (484 words) - 13:21, 10 January 2023
CutRunTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (266 words) - 22:20, 26 August 2020
CMWP
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (329 words) - 17:57, 10 June 2022
MetaBAT
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (258 words) - 21:21, 6 December 2019
Sine scan
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 18:28, 1 June 2022
Merlin
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (264 words) - 12:56, 15 August 2022
Stumpy
[[Category:Software]][[Category:Workflow Automation]] ...calable Python Library for Time Series Data Mining. Journal of Open Source Software, 4(39), 1504.

3 KB (430 words) - 15:16, 13 April 2023
Category:Web
[[Category:Software]]

11 members (1 subcategory, 0 files) - 19:51, 22 August 2022
Jellyfish
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 19:27, 12 August 2022
SibeliaZ
[[Category:Software]]

2 KB (284 words) - 20:40, 12 August 2022
Krona
[[Category:Software]][[Category:Biology]]

2 KB (254 words) - 19:29, 12 August 2022
GRACKLE
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Astronomy]]

2 KB (294 words) - 17:18, 15 August 2022
MinkowskiEngine
[[Category:Software]][[Category:Machine Learning]]

2 KB (256 words) - 17:52, 31 May 2022
TEtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (257 words) - 21:29, 6 December 2019
Segment-liftover
[[Category:Software]]

2 KB (251 words) - 20:38, 12 August 2022
Category:Geospatial
[[Category:Software]]

13 members (0 subcategories, 0 files) - 18:20, 7 July 2017
FSA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (307 words) - 20:38, 23 May 2022
Theano
[[Category:Software]][[Category:Library]][[Category:Math]][[Category:GPU]] |{{#vardefine:url|http://www.deeplearning.net/software/theano/}}

3 KB (345 words) - 15:58, 6 June 2022
ParaView
[[Category:Software]][[Category:Data Science]]

3 KB (416 words) - 21:28, 13 October 2023
Clover
[[Category:Software]]

2 KB (296 words) - 13:47, 15 August 2022
Phenix
[[Category:Software]][[Category:Material Science]] PHENIX is a software suite for the automated determination of macromolecular structures using X-

3 KB (325 words) - 18:12, 21 August 2022
Macaulay2
[[Category:Software]][[Category:Phylogenetics]] A software system for research in algebraic geometry

2 KB (246 words) - 20:23, 15 August 2022
SNPGenie
[[Category:Software]][[Category:Phylogenetics]]

3 KB (423 words) - 18:41, 1 June 2022
SMARTdenovo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (296 words) - 21:24, 6 December 2019
Mxnet
[[Category:Software]][[Category:healthcare]]

2 KB (265 words) - 22:02, 10 October 2022
Category:Structure
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:32, 6 June 2022
Genblastg
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (306 words) - 18:19, 5 February 2024
Sate
[[Category:Software]][[Category:biology]][[Category:phylogenetics]] |{{#vardefine:url|http://phylo.bio.ku.edu/software/sate/sate.html}}

7 KB (910 words) - 20:43, 21 December 2022
Magicblast
[[Category:Software]]

2 KB (304 words) - 16:29, 6 October 2022
Detectron2
[[Category:Software]][[Category:Library]]

3 KB (295 words) - 19:33, 15 July 2021
OpenFOAM
[[Category:Software]][[Category:Fluid Dynamics]] |{{#vardefine:exe|}} 

3 KB (445 words) - 14:20, 15 December 2022
SourceTracker2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (357 words) - 14:19, 14 September 2020
Nsight
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

3 KB (316 words) - 20:39, 24 August 2022
Pbrt
[[Category:Software]][[Category:Phylogenetics]]

2 KB (259 words) - 18:20, 27 May 2022
BOLT-LMM
[[Category:Software]][[Category:Phylogenetics]] The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm f

2 KB (289 words) - 16:24, 2 January 2020
RNAstructure
[[Category:Software]]

3 KB (359 words) - 21:58, 21 August 2022
BIOM
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (272 words) - 21:02, 6 December 2019
KING
[[Category:Software]][[Category:Biology]][[Category:Genomics]] [http://people.virginia.edu/~wc9c/KING/manual.html Software Manual in HTML format]

3 KB (305 words) - 19:28, 12 August 2022
GenomeThreader
[[Category:Software]][[Category:phylogenetics]] GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions

3 KB (315 words) - 16:35, 29 November 2021
UNAFold
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...compute suboptimal foldings that mimic the performance of the famous mfold software.

3 KB (359 words) - 20:53, 12 August 2022
Nextclade
[[Category:Software]]

2 KB (260 words) - 19:03, 12 January 2023
Novoalign
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (370 words) - 17:19, 19 August 2022
Slamdunk
[[Category:Software]][[Category:Phylogenetics]] SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis

3 KB (294 words) - 20:55, 27 May 2022
ADMB
[[Category:Software]][[Category:Math]][[Category:Modeling]]

3 KB (302 words) - 20:49, 11 August 2022
Program Database Toolkit
[[Category:Software]][[Category:Language]][[Category:Programming]][[Category:Performance Analys uniform way through a class library supporting common PDB operations. Software

3 KB (370 words) - 14:38, 18 October 2022
PanX
[[Category:Software]][[Category:Phylogenetics]] panX is a software package for pan-genome analysis, interactive visualization and exploration.

3 KB (346 words) - 21:22, 6 December 2019
Pandaseq
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

2 KB (239 words) - 18:08, 19 August 2022
Comp-D MPI
[[Category:Software]][[Category:Statistics]]

2 KB (264 words) - 16:54, 9 June 2022
Gimmemotifs
[[Category:Software]]

2 KB (293 words) - 15:41, 30 June 2023
AMOS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Assembly]] ...mbly infrastructure. In this sense, AMOS is both a design philosophy and a software system.

3 KB (344 words) - 12:41, 12 August 2022
Gmap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (450 words) - 17:11, 15 August 2022
Conda
[[Category:Software]][[Category:Programming]]

16 KB (2,392 words) - 20:14, 16 April 2024
Python
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|1}} 

5 KB (670 words) - 19:42, 3 February 2023
Neovim
[[Category:Software]][[Category:Programming]][[Category:Shell]][[Category:Utility]]

3 KB (327 words) - 20:24, 2 February 2024
SQANTI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (321 words) - 21:24, 6 December 2019
FALCON
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (395 words) - 15:19, 15 August 2022
Skmer
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (260 words) - 13:31, 15 August 2022
PosiGene
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:22, 6 December 2019
CUDA Examples
[[Category:Software]]

12 KB (1,540 words) - 17:09, 21 December 2022
VARI
[[Category:Software]][[Category:math]][[Category:visualization]]

2 KB (248 words) - 14:10, 11 October 2022
Python-core
[[Category:Software]][[Category:Language]][[Category:Programming]]

3 KB (318 words) - 20:04, 21 August 2022
Bertini
[[Category:Software]][[Category:Math]] Software for solving polynomial systems

2 KB (248 words) - 12:48, 15 August 2022
Pbsmrtpipe
[[Category:Software]][[Category:Biology]][[Category:Programming]]

2 KB (239 words) - 18:05, 15 August 2022
MPFR
[[Category:Software]][[Category:Library]][[Category:Math]]

2 KB (302 words) - 21:22, 6 December 2019
SUMO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 21:24, 6 December 2019
BAPS
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BAPS/}}

3 KB (313 words) - 18:07, 12 August 2022
AutoDock-GPU
[[Category:Software]][[Category:Chemistry]]

3 KB (332 words) - 15:25, 12 August 2022
Popoolation
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (321 words) - 21:23, 6 December 2019
Ambertools
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

3 KB (426 words) - 14:18, 10 July 2023
Simka
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 19:25, 18 February 2021
Sputnik
[[Category:Software]][[Category:Biology]]

2 KB (311 words) - 15:50, 22 August 2022
Dtiprep
[[Category:Software]][[Category:Phylogenetics]]

2 KB (290 words) - 21:50, 27 August 2020
Basemount
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (375 words) - 18:50, 10 June 2022
OCOCO
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (284 words) - 21:22, 6 December 2019
Caper
[[Category:Software]][[Category:Data_Science]]

3 KB (425 words) - 14:43, 11 October 2023
SNPhylo
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (340 words) - 17:48, 10 June 2022
Zstd
[[Category:Software]][[Category:Phylogenetics]]

2 KB (264 words) - 17:55, 22 August 2022
BEAR
[[Category:Software]][[Category:Biology]][[Category:genomics]]

2 KB (274 words) - 18:13, 12 August 2022
YAHA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (320 words) - 20:56, 12 August 2022
AmPEPpy
[[Category:Software]][[Category:Phylogenetics]]

3 KB (291 words) - 14:13, 22 April 2021
Nbody
[[Category:Software]][[Category:Astronomy]] |{{#vardefine:exe|1}} 

2 KB (248 words) - 13:11, 6 June 2022
MEGASAT
[[Category:Software]][[Category:Phylogenetics]] MEGASAT is a software tool that can automatically infer genotypes from high-throughput microsatel

2 KB (278 words) - 13:22, 28 August 2020
LFMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (337 words) - 19:50, 15 August 2022
Scipion
[[Category:Software]][[Category:Image Processing]] ...ts and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all step

2 KB (289 words) - 21:24, 6 December 2019
TURBOMOLE
[[Category:Software]][[Category:Chemistry]] TURBOMOLE is a licensed software. To use it, please provide your license. We will set the file permissions a

3 KB (369 words) - 17:42, 15 August 2022
Kallisto
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (278 words) - 16:13, 10 June 2022
Pathoscope
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

3 KB (323 words) - 17:02, 21 August 2022
Ssr pipeline
[[Category:Software]][[Category:biology]][[Category:Sequencing]] ...hon installed on their computers or who do not have the ability to compile software also may choose to download packaged executable files. These files include

4 KB (501 words) - 18:55, 6 June 2022
GraphViz
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] ...nd networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual inter

2 KB (276 words) - 19:03, 12 August 2022
Lazypipe
[[Category:Software]]

4 KB (507 words) - 16:54, 14 December 2022
KisSplice
[[Category:Software]][[Category:Biology]] KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It

3 KB (359 words) - 19:33, 15 August 2022
MetaPhysicl
[[Category:Software]][[Category:Math]][[Category:Astronomy]][[Category:Simulation]]

2 KB (247 words) - 19:28, 18 August 2022
Localbrainage
[[Category:Software]][[Category:Biology]][[Category:Machine Learning]]

2 KB (238 words) - 19:30, 12 August 2022
Genomic-fluidity
[[Category:Software]][[Category:Phylogenetics]]

2 KB (282 words) - 21:21, 6 December 2019
Slurm
[[Category:Software]][[Category:Scheduler]] ...a fair chance of using the resources without interfering with each other. Software called a resource manager and a scheduler are required to fulfill the above

5 KB (763 words) - 17:37, 5 March 2024
NxTrim
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...e reads according to the orientation implied by the adapter location. This software is not commercially supported.

2 KB (273 words) - 20:08, 12 August 2022
Cowast
Coupled Ocean-Atmosphere-Wave-Sediment Trnaspost (COWAST) is public domain software developed by the United States Geological Services. The COWAST modeling sys ...urning on the HDF5 support. The build_coawst.sh, configures and builds the software, and the binary coawstM is installed in the top-level directory.

3 KB (443 words) - 13:28, 27 March 2024
Recon
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://eddylab.org/software/recon/}}

2 KB (260 words) - 21:38, 21 August 2022
TrackTools
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|http://marecilab.mbi.ufl.edu/software/TrackTools/TrackTools.zip}}

2 KB (251 words) - 16:40, 22 August 2022
ParlAI
[[Category:Software]][[Category:Phylogenetics]] title={ParlAI: A Dialog Research Software Platform},

3 KB (301 words) - 15:55, 21 July 2021
Circos
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://circos.ca/software/download/circos/}}

3 KB (409 words) - 13:35, 15 August 2022
PyVista
[[Category:Software]][[Category:Phylogenetics]]

3 KB (344 words) - 13:56, 25 September 2020
Modules
[[Category:Software]][[Category:Infrastructure]] ...g and maintaining your environment while running a large number of diverse software applications with different requirements can be a daunting task. The Resea

3 KB (428 words) - 18:21, 7 February 2023
TEMP
[[Category:Software]][[Category:Phylogenetics]] TEMP is a software package for detecting transposable elements (TEs) insertions and absences f

2 KB (270 words) - 21:29, 6 December 2019
Qcat
[[Category:Software]][[Category:Phylogenetics]]

3 KB (306 words) - 16:17, 23 January 2020
RTGTools
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 15:06, 10 June 2022
DCC
[[Category:Software]][[Category:biology]][[Category:NGS]]

2 KB (236 words) - 18:45, 12 August 2022
LobSTR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (259 words) - 15:19, 10 June 2022
Leafaudio
[[Category:Software]][[Category:Audio]][[Category:Machine Learning]]

2 KB (288 words) - 19:49, 15 August 2022
Segemehl
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/segemehl/}}

3 KB (406 words) - 22:30, 21 August 2022
SLAW
[[Category:Software]][[Category:Chemistry]][[Category:Spectroscopy]]

3 KB (389 words) - 23:49, 21 August 2022
Octave
[[Category:Software]][[Category:Math]] |{{#vardefine:url|http://www.gnu.org/software/octave/}}

2 KB (333 words) - 15:22, 19 August 2022
TPMcalculator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 19:45, 1 June 2022
MitoPhAST
[[Category:Software]][[Category:Phylogenetics]]

3 KB (382 words) - 14:27, 23 April 2020
GULP
[[Category:Software]][[Category:Material Science]]

3 KB (311 words) - 18:09, 15 August 2022
OPENACC
[[Category:Software]][[Category:Programming]]

2 KB (291 words) - 12:01, 26 August 2022
RDnaTools
[[Category:Software]][[Category:Phylogenetics]] ...Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol,

3 KB (361 words) - 21:24, 6 December 2019
GeneTorrent
[[Category:Software]][[Category:Biology]][[Category:File Management]] Software documentation [https://cghub.ucsc.edu/docs/GeneTorrent_man_3.3.4.pdf in PDF

3 KB (316 words) - 13:54, 21 October 2022
Plotsr
[[Category:Software]]

2 KB (271 words) - 20:00, 5 August 2022
CPAT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (277 words) - 16:34, 10 June 2022
Mercurial
[[Category:Software]][[Category:Revision Control]]

2 KB (253 words) - 19:59, 10 June 2022
Simulia
[[Category:Software]][[Category:Simulation]][[Category:Visualization]]

2 KB (252 words) - 18:23, 1 June 2022
OpenNeuro
[[Category:Software]][[Category:Data Science]][[Category:Biology]]

2 KB (248 words) - 17:56, 19 August 2022
RELION
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

3 KB (434 words) - 21:42, 21 August 2022
HPL
[[Category:Software]][[Category:Programming]][[Category:Performance Analysis]]

2 KB (255 words) - 12:01, 26 August 2022
MitoFinder
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 21:23, 6 December 2019
Xapian
[[Category:Software]][[Category:Library]]

2 KB (265 words) - 15:42, 10 June 2022
Fslmrs
[[Category:Software]][[Category:Spectroscopy]][[Category:Chemistry]] ...ingle voxel and multi-voxel (MRSI) datasets. FSL-MRS is part of FSL (FMRIB Software Library).

3 KB (293 words) - 16:50, 15 August 2022
YASRA
[[Category:Software]] [[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (304 words) - 20:56, 12 August 2022
Scalablast
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://omics.pnl.gov/software/ScalaBLAST.php}}

3 KB (318 words) - 20:34, 12 August 2022
FastqPuri
[[Category:Software]][[Category:Phylogenetics]] Software and source code of FastqPuri. It creates quality reports of fastq files and

2 KB (272 words) - 15:29, 19 January 2021
PartitionFinder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (402 words) - 16:57, 21 August 2022
COLMAP
[[Category:Software]][[Category:Modeling]] ...eatures for reconstruction of ordered and unordered image collections. The software is licensed under the new BSD license. If you use this project for your res

2 KB (290 words) - 16:53, 6 June 2022
Ucsc-maskoutfa
[[Category:Software]][[Category:Phylogenetics]]

2 KB (237 words) - 20:09, 1 June 2022
MCR
[[Category:Software]][[Category:Math]][[Category:Language]] ...TLAB Runtime enable you to create and distribute numerical applications or software components quickly and securely.

2 KB (292 words) - 18:06, 3 June 2022
ASHS
[[Category:Software]][[Category:Biology]][[Category:imaging]] ASHS is a software package for automatic segmentation of hippocampal subfields in MRI scans. A

3 KB (353 words) - 20:32, 24 August 2022
SEPP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (313 words) - 20:39, 12 August 2022
Lrgapcloser
[[Category:Software]][[Category:Biology]]

3 KB (326 words) - 19:30, 12 August 2022
Gapseq
[[Category:Software]][[Category:Chemistry]][[Category:Biology]]

2 KB (252 words) - 14:22, 11 October 2022
ExaBayes
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://sco.h-its.org/exelixis/web/software/exabayes/}}

7 KB (886 words) - 21:12, 21 December 2022
NewTargets
[[Category:Software]]

3 KB (379 words) - 20:06, 12 August 2022
Forecasting
[[Category:Software]]

3 KB (308 words) - 14:41, 27 January 2023
FMRIPrep
[[Category:Software]][[Category:Data Mining]]

2 KB (288 words) - 16:47, 17 October 2023
Shogun
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 18:14, 1 June 2022
Mega2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (310 words) - 21:21, 6 December 2019
Fusion twas
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 19:27, 26 May 2022
Face recognition
[[Category:Software]][[Category:Phylogenetics]]

2 KB (297 words) - 14:56, 3 June 2022
CGView
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 19:39, 23 May 2022
Valouev
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (252 words) - 21:29, 6 December 2019
Cluster3
[[Category:Software]][[Category:Biology]][[Category:Genomics]] The open source clustering software available here implement the most commonly used clustering methods for gene

2 KB (274 words) - 18:37, 12 August 2022
Smudgeplot
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 15:19, 4 May 2021
GrADS
[[Category:Software]][[Category:Geospatial]][[Category:Math]]

3 KB (334 words) - 20:26, 24 August 2022
LAPACK
[[Category:Software]][[Category:Library]][[Category:Programming]][[Category:Compiler]] LAPACK is a standard software library for numerical linear algebra. It provides routines for solving syst

2 KB (286 words) - 17:43, 15 August 2022
Generic Mapping Tools
[[Category:Software]]

3 KB (336 words) - 16:56, 10 October 2022
MinPath
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (317 words) - 21:22, 6 December 2019
Torch-geometric
[[Category:Software]][[Category:Phylogenetics]]

2 KB (241 words) - 19:43, 1 June 2022
OTB
[[Category:Software]][[Category:Geospatial]]

3 KB (311 words) - 17:27, 10 June 2022
Flopp
[[Category:Software]][[Category:Biology]][[Category:Population Biology]] flopp is a software package for single individual haplotype phasing of polyploid organisms from

2 KB (286 words) - 18:35, 1 December 2023
MNEtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 16:13, 6 June 2022
SeqMap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (373 words) - 22:35, 21 August 2022
MTR
[[Category:Software]]

2 KB (245 words) - 14:03, 23 June 2021
Libunistring
[[Category:Software]][[Category:Library]] |{{#vardefine:url|https://www.gnu.org/software/libunistring/}}

2 KB (269 words) - 15:49, 10 June 2022
Mpinterfaces
[[Category:Software]][[Category:Math]]

2 KB (279 words) - 12:27, 19 August 2022
Velvet
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

4 KB (523 words) - 17:06, 14 December 2022
BlobTools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:15, 6 December 2019
Openstructure
[[Category:Software]][[Category:Biology]] If you like our software and have used it in your research project, please cite the following paper

3 KB (403 words) - 23:35, 6 February 2023
SU2
[[Category:Software]][[Category:Phylogenetics]] ...tiphysics analysis and design optimization freely available as open-source software and involving everyone in its creation and development.

2 KB (278 words) - 18:50, 1 June 2022
Fastv
[[Category:Software]][[Category:Bioinformatics]][[Category:Sequencing]]

3 KB (327 words) - 20:08, 19 April 2024
RepeatAnalysis
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (238 words) - 14:34, 26 August 2020
Sambamba
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (299 words) - 20:33, 12 August 2022
Hal
[[Category:Software]][[Category:Phylogenetics]]

3 KB (366 words) - 18:11, 15 August 2022
Gpufit
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 19:34, 26 May 2022
Cvbio
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 13:11, 21 October 2020
Orthologer
[[Category:Software]][[Category:Biology]] ...e:url|https://www.orthodb.org/orthodb_userguide.html#standalone-orthologer-software}}

2 KB (238 words) - 20:03, 31 May 2022
VISPR
[[Category:Software]][[Category:Phylogenetics]]

2 KB (261 words) - 15:53, 21 June 2023
Spyder
[[Category:Software]][[Category:Programming]]

3 KB (350 words) - 18:56, 21 August 2022
Export2graphlan
export2graphlan is a conversion software tool for producing both

3 KB (314 words) - 15:12, 15 August 2022
NUPACK
[[Category:Software]][[Category:Phylogenetics]] NUPACK is a software suite for the analysis and design of nucleic acid structures, devices, and

2 KB (263 words) - 21:22, 6 December 2019
PSMC
[[Category:Software]][[Category:Phylogenetics]] This software package infers population size history from a diploid sequence

2 KB (263 words) - 14:01, 28 February 2020
AutoDock
[[Category:Software]][[Category:Biology]]

2 KB (268 words) - 15:47, 10 June 2022
Pipe-clip
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (254 words) - 21:22, 6 December 2019
Counterr
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 21:15, 6 December 2019
M5nr
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 19:46, 12 August 2022
Pygenometracks
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (375 words) - 20:54, 18 May 2023
Tantan
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (280 words) - 19:04, 1 June 2022
PETSc
[[Category:Software]][[Category:Math]] ...ferential equations. It is the world’s most widely used parallel numerical software library for partial differential equations and sparse matrix computations.

3 KB (337 words) - 15:25, 19 August 2022
Last
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (342 words) - 19:29, 12 August 2022
Rapidtide
[[Category:Software]][[Category:Phylogenetics]]

2 KB (281 words) - 13:58, 7 May 2020
Freesurfer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'lau

3 KB (323 words) - 20:09, 12 August 2022
Gflags
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (291 words) - 17:07, 15 August 2022
HMM-FRAME
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 21:21, 6 December 2019
MaSuRCA
[[Category:Software]][[Category:Biology]][[Category:Alignment]] MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Conse

3 KB (340 words) - 18:24, 18 August 2022
Artemis
[[Category:Software]][[Category:Biology]]

3 KB (378 words) - 14:53, 12 August 2022
DSK
[[Category:Software]][[Category:Biology]][[Category:NGS]] DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory

3 KB (315 words) - 17:17, 10 June 2022
IOAPI
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

2 KB (341 words) - 19:35, 24 August 2022
Pggb
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 19:56, 6 November 2020
Anvio
[[Category:Software]][[Category:Biology]]

2 KB (237 words) - 14:20, 12 August 2022
Compacta
[[Category:Software]] Compacta is a software designed to reduce the number of contigs given by

3 KB (294 words) - 13:52, 15 August 2022
Pseudofinder
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 13:41, 11 October 2021
INLA
[[Category:Software]][[Category:statistics]][[Category:modeling]][[Category:Programming]]

2 KB (236 words) - 12:20, 26 August 2022
WoLFPSort
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 21:29, 6 December 2019
Bridger
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (341 words) - 13:14, 15 August 2022
Ciriquant
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 15:00, 30 March 2022
WGS Assembler
[[Category:Software]][[Category:biology]][[Category:genomics]] Celera Assembler : scientific software for biological research. Celera Assembler is a de novo whole-genome shotgun

3 KB (359 words) - 20:56, 12 August 2022
PAUP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] PAUP is a software package for inference of evolutionary trees.

2 KB (249 words) - 20:15, 12 August 2022
UShER
[[Category:Software]][[Category:Phylogenetics]]

3 KB (425 words) - 21:08, 13 January 2022
PsiCLASS
[[Category:Software]][[Category:Phylogenetics]]

4 KB (480 words) - 15:00, 14 December 2022
DeepGS
[[Category:Software]][[Category:Phylogenetics]]

3 KB (342 words) - 22:21, 26 August 2020
CFITSIO
[[Category:Software]][[Category:Library]][[Category:Compiler]]

2 KB (291 words) - 13:26, 15 August 2022
METIS
[[Category:Software]][[Category:Utility]]

2 KB (247 words) - 19:40, 18 August 2022
Moses
[[Category:Software]]

3 KB (381 words) - 15:15, 17 October 2022
Mach2VCF
[[Category:Software]][[Category:Biology]]

2 KB (242 words) - 14:49, 10 June 2022
Squigglenet
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (262 words) - 20:12, 9 May 2022
Category:Workflow Automation
[[Category:Software]]

13 members (0 subcategories, 0 files) - 19:51, 22 August 2022
Kraken
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:url|http://ccb.jhu.edu/software/kraken/}}

4 KB (483 words) - 19:28, 12 August 2022
Scrappie
[[Category:Software]]

3 KB (416 words) - 13:43, 7 April 2021
ECE
[[Category:Software]][[Category:Physics]] Ece software container

3 KB (360 words) - 21:39, 3 March 2023
Graftm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 22:16, 27 August 2020
IAssembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (301 words) - 18:39, 15 August 2022
Mugsy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (298 words) - 21:22, 6 December 2019
SMR
[[Category:Software]] |{{#vardefine:url|https://cnsgenomics.com/software/smr/#Overview}}

3 KB (362 words) - 18:27, 19 August 2021
Category:Data Mining
[[Category:Data]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:25, 23 August 2022
Geopython
[[Category:Software]][[Category:Programming]][[Category:Geospatial]]

2 KB (246 words) - 12:22, 26 August 2022
TGICL
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]] |{{#vardefine:url|http://compbio.dfci.harvard.edu/tgi/software/}}

3 KB (340 words) - 20:47, 12 August 2022
ASPECT
[[Category:Software]][[Category:Library]]

2 KB (285 words) - 15:16, 3 June 2022
PATRIC
[[Category:Software]][[Category:Machine Learning]] PATRIC is an integration of different types of data and software tools that support research on bacterial pathogens. The typical biologist s

3 KB (390 words) - 16:04, 6 June 2022
Smartie-sv
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 18:30, 1 June 2022
Mamba
[[Category:Software]]

3 KB (429 words) - 20:16, 3 June 2022
HOOMD
[[Category:Software]][[Category:Library]][[Category:Math]]

5 KB (607 words) - 15:40, 6 June 2022
Mosdepth
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:23, 6 December 2019
Sampledock
[[Category:Software]][[Category:Machine Learning]][[Category:Molecular Dynamics]]

2 KB (253 words) - 17:59, 15 August 2022
DeSALT
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

3 KB (350 words) - 14:38, 15 August 2022
Relernn
[[Category:Software]]

2 KB (261 words) - 21:20, 6 February 2024
SAMStat
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:sequencing]]

3 KB (429 words) - 20:34, 12 August 2022
LCModel
[[Category:Software]] ...maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-tes

4 KB (497 words) - 16:28, 15 December 2022
Rbp-maps
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 18:54, 27 May 2022
ESPRIT
[[Category:Software]][[Category:Biology]]

4 KB (460 words) - 15:10, 15 August 2022
Aria2
[[Category:Software]][[Category:Utility]]

3 KB (326 words) - 14:05, 17 September 2020
GRASS
[[Category:Software]][[Category:Geospatial]] ...ort System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, g

5 KB (593 words) - 21:27, 14 December 2022
Wtdbg
[[Category:Software]][[Category:Phylogenetics]]

3 KB (310 words) - 17:44, 22 August 2022
Gerbil
[[Category:Software]][[Category:Phylogenetics]] ...hat is specialized for high effiency when counting k-mers for large k. The software is decribed here.

3 KB (320 words) - 14:34, 3 January 2020
QGIS
[[Category:Software]][[Category:Geospatial]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

2 KB (288 words) - 20:27, 24 August 2022
BIOMART
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (310 words) - 18:16, 12 August 2022
Homopolish
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (298 words) - 15:54, 6 July 2022
ProDy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (294 words) - 19:38, 21 August 2022
Trimesh
[[Category:Software]] Trimesh [Computer software]. (2019). Retrieved from https://github.com/mikedh/trimesh

2 KB (288 words) - 15:36, 9 March 2023
Biopieces
[[Category:Software]][[Category:Phylogenetics]] The software requires users to create the BP_DATA, tmp, and BP_LOG directories in your w

3 KB (410 words) - 15:40, 10 December 2021
BFAST
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (276 words) - 18:16, 12 August 2022
Elastix
[[Category:Software]][[Category:Phylogenetics]] ...on the well-known Insight Segmentation and Registration Toolkit (ITK). The software consists of a collection of algorithms that are commonly used to solve (med

3 KB (365 words) - 15:30, 3 June 2022
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
Pdb2pqr
[[Category:Software]][[Category:Biology]][[Category:modeling]]

3 KB (336 words) - 17:51, 15 August 2022
SMRT-SV
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (340 words) - 00:03, 22 August 2022
Fpocket
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (268 words) - 19:02, 21 July 2022
Cpc
[[Category:Software]][[Category:Phylogenetics]]

2 KB (287 words) - 17:22, 9 June 2022
Crest
[[Category:Software]]

3 KB (320 words) - 16:16, 24 April 2023
C-wap
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]][[Category:Biology]]

2 KB (281 words) - 13:16, 15 August 2022
CisGenome
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (249 words) - 18:30, 12 August 2022
Graph-tool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 17:20, 15 August 2022
MentaLiST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (368 words) - 18:51, 10 June 2022
Ncftp
[[Category:Software]][[Category:File Management]]

2 KB (256 words) - 13:54, 21 October 2022
Seqwish
[[Category:Software]][[Category:Phylogenetics]]

3 KB (347 words) - 21:24, 6 December 2019
Draft:UFRC Help and Documentation Testz
==[[:Category:Applications|Software and Reference Data]] [[Image:Software.png|right|frameless|upright=0.1]]==

4 KB (515 words) - 14:06, 30 March 2023
Fast5tools
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (251 words) - 18:31, 28 April 2022
MAnorm
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (370 words) - 14:07, 27 May 2022
LS-DYNA
[[Category:Software]][[Category:Physics]]

3 KB (394 words) - 20:13, 15 August 2022
CONNECT
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 14:53, 24 November 2020
CMake
[[Category:Software]][[Category:Programming]] ...designed to build, test and package software. CMake is used to control the software compilation process using simple platform and compiler independent configur

3 KB (326 words) - 13:49, 15 August 2022
Blackfynn
[[Category:Software]][[Category:Data Mining]]

2 KB (280 words) - 19:12, 27 May 2022
Piranha
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/piranha/}}

2 KB (266 words) - 16:02, 10 June 2022
Ltr finder
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (416 words) - 20:21, 15 August 2022
Autometa
[[Category:Software]][[Category:Phylogenetics]]

3 KB (300 words) - 21:19, 6 December 2019
GDAL
[[Category:Software]][[Category:Geospatial]][[Category:Library]]

3 KB (313 words) - 18:21, 8 July 2022
Hapdup
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (324 words) - 21:07, 7 April 2022
V-Phaser
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (390 words) - 20:07, 27 May 2022
Category:Spectroscopy
[[Category:Biology]][[Category:Software]]

7 members (0 subcategories, 0 files) - 15:29, 23 August 2022
Nimare
[[Category:Software]]

3 KB (343 words) - 15:27, 15 August 2022
WebLogo
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Graphics]]

3 KB (417 words) - 17:40, 22 August 2022
ELPA
[[Category:Software]][[Category:Math]][[Category:Library]][[Category:Compiler]]

2 KB (290 words) - 14:58, 15 August 2022
Samba Access
...:''' There is a known issue with the CIFS client in Mac Finder. The Finder software in current version of MacOS does not have a refresh button to update conten

5 KB (816 words) - 17:31, 31 August 2023
Arcashla
[[Category:Software]]

2 KB (250 words) - 19:33, 24 July 2023
Vibrant
[[Category:Software]][[Category:Genomics]]

3 KB (333 words) - 17:36, 15 August 2022
ASTRID
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 15:16, 12 August 2022
Bamm
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 18:00, 12 August 2022
Svtyper
[[Category:Software]]

3 KB (360 words) - 14:04, 3 October 2022
Lumpy
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (235 words) - 19:46, 12 August 2022
LoRDEC
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 13:38, 22 April 2021
Dapars
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (306 words) - 20:05, 23 March 2023
SimNIBS
[[Category:Software]][[Category:Phylogenetics]] SimNIBS is a free and open source software package for the Simulation of Non-invasive Brain Stimulation. It allows for

3 KB (324 words) - 18:04, 28 August 2020
SortMeRNA
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (299 words) - 17:00, 10 June 2022
Necklace
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ovo assembly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resultin

3 KB (312 words) - 21:22, 6 December 2019
LIBXSMM
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (257 words) - 17:46, 15 August 2022
SQL Developer
[[Category:Software]][[Category:Programming]][[Category:Database]] ...'<code>SQLDeveloper</code>' or '<code>sqldeveloper.sh</code>' to start the software.

3 KB (323 words) - 17:32, 15 August 2022
Draft:UFRC Help and Documentation Test
==[[:Category:Applications|Software and Reference Data]]==

3 KB (462 words) - 14:03, 30 March 2023
SpliceGrapher
[[Category:Software]][[Category:biology]][[Category:sequencing]]

3 KB (318 words) - 21:24, 6 December 2019
VTK
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] he Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK co

3 KB (360 words) - 20:55, 12 August 2022
Prottest3
[[Category:Software]] This software requires GUI. See more: [https://help.rc.ufl.edu/doc/GUI_Programs GUI Progr

3 KB (369 words) - 15:57, 13 September 2022
Rainbowfish
[[Category:Software]][[Category:Phylogenetics]]

2 KB (233 words) - 19:18, 2 June 2022
MetaWRAP
[[Category:Software]][[Category:Phylogenetics]] ...lexible pipeline for genome-resolved metagenomic data analysis. If certain software wrapped into metaWRAP were integral to your investigation (e.g. Salmon, Max

3 KB (412 words) - 22:31, 8 September 2020
Localizer
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:18, 26 May 2022
AfterQC
[[Category:Software]][[Category:Phylogenetics]]

3 KB (341 words) - 21:19, 6 December 2019
Rapidsai
[[Category:Software]][[Category:Data Science]] The RAPIDS suite of open source software libraries and APIs gives you the ability to execute end-to-end data science

3 KB (348 words) - 21:29, 21 August 2022
Virsorter
[[Category:Software]][[Category:Genomics]]

2 KB (261 words) - 21:12, 21 October 2022
RFAA
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...abases and structure templates as well as required dependencies to run the software. However, users should download the contents of the repo locally to run the

3 KB (323 words) - 16:56, 27 March 2024
Pycoqc
[[Category:Software]] ...ive quality control for Oxford Nanopore Sequencing. Journal of Open Source Software, 4(34), 1236, https://doi.org/10.21105/joss.01236

3 KB (309 words) - 13:55, 21 October 2022
MOABS
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (291 words) - 19:53, 12 August 2022
AlphaFold
[[Category:Software]][[Category:Phylogenetics]] ...GPU. An example job script for a run with the test data included with the software is shown below.

6 KB (832 words) - 15:38, 2 February 2024
Category:Visualization
[[Category:Software]][[Category:Data]]

19 members (0 subcategories, 0 files) - 14:53, 19 August 2022
Assemblytics
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 17:02, 29 September 2020
WU BLAST
[[Category:Software]][[Category:Biology]]

3 KB (356 words) - 17:44, 22 August 2022
Ufraw
[[Category:Software]][[Category:Data Mining]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (316 words) - 14:45, 6 June 2022
Brewery
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:40, 24 January 2020
RDKit
[[Category:Software]][[Category:Chemistry]]

2 KB (235 words) - 21:35, 21 August 2022
CNV-Seq
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (245 words) - 13:50, 15 August 2022
MotionCor2
[[Category:Software]][[Category:imaging]] |{{#vardefine:url|http://msg.ucsf.edu/em/software/index.html}}

3 KB (375 words) - 20:33, 24 August 2022
EnTAP
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (236 words) - 21:20, 6 December 2019
Scythe
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (262 words) - 20:36, 12 August 2022
FineRADstructure
[[Category:Software]][[Category:Phylogenetics]]

3 KB (293 words) - 14:53, 5 January 2022
SSPACE
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (333 words) - 20:44, 12 August 2022
R
[[Category:Software]][[Category:Statistics]][[Category:Programming]] |{{#vardefine:exe|1}} 

6 KB (981 words) - 20:45, 16 October 2023
QuartetScores
[[Category:Software]][[Category:Phylogenetics]]

2 KB (258 words) - 14:50, 27 April 2020
BayesR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (253 words) - 15:01, 10 June 2022
NucleoATAC
[[Category:Software]][[Category:biology]]

2 KB (276 words) - 20:08, 12 August 2022
NGmerge
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 21:22, 6 December 2019
TraitRate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (292 words) - 16:54, 22 August 2022
Ragout
[[Category:Software]][[Category:Genomics]]

3 KB (318 words) - 21:29, 21 August 2022
PLEK
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (241 words) - 14:57, 10 June 2022
BEAGLE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] BEAGLE is a state of the art software package for analysis of large-scale genetic data sets with hundreds of thou

5 KB (615 words) - 15:36, 14 December 2022
MUSCLE
[[Category:Software]][[Category:Biology]][[Category:Alignment]] |{{#vardefine:exe|}} 

2 KB (313 words) - 19:55, 12 August 2022
FastQTL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (325 words) - 14:40, 22 July 2020
SST-Core
[[Category:Software]][[Category:Simulation]]

3 KB (324 words) - 21:24, 6 December 2019
NANO
[[Category:Software]][[Category:Programming]]

3 KB (360 words) - 19:24, 29 November 2022
ART
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.niehs.nih.gov/research/resources/software/biostatistics/art/}}

3 KB (440 words) - 21:10, 6 December 2019
ANGSD
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.

3 KB (355 words) - 12:42, 12 August 2022
Albumentations
[[Category:Software]][[Category:Machine Learning]][[Category:Imaging]][[Category:Image Processi

2 KB (263 words) - 12:33, 12 August 2022
XZ
[[Category:Software]][[Category:compression]][[Category:library]] XZ Utils is free general-purpose data compression software with a high compression ratio. XZ Utils were written for POSIX-like systems

2 KB (287 words) - 14:19, 27 May 2022
DiffReps
[[Category:Software]][[Category:Biology]]

4 KB (474 words) - 14:41, 15 August 2022
Meta-Marc
[[Category:Software]][[Category:Phylogenetics]] ...is not intended to be used as a final annotation or all-in-one tool; this software simply offers the user another view of complex metagenomic data. Users are

3 KB (336 words) - 14:51, 20 January 2021
QIIME
[[Category:Software]][[Category:Biology]][[Category:genomics]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas

4 KB (555 words) - 15:15, 19 August 2022
COMSOL
[[Category:Software]][[Category:Simulation]] COMSOL Multiphysics® is a general-purpose simulation software for modeling designs, devices, and processes in all fields of engineering,

3 KB (426 words) - 19:40, 20 February 2024
UKFractography
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 20:13, 1 June 2022
MountainSort
[[Category:Software]][[Category:Library]] MountainSort (a component of MountainLab) is spike sorting software developed by Jeremy Magland, Alex Barnett, and Leslie Greengard at the Cent

3 KB (309 words) - 21:22, 6 December 2019
Spruceup
[[Category:Software]][[Category:Phylogenetics]] ...quence blocks (alignment columns) commonly addressed by alignment trimming software.

3 KB (317 words) - 21:24, 6 December 2019
Scala
[[Category:Software]][[Category:Programming]][[Category:Language]] object-functional programming language for general software applications.

2 KB (293 words) - 12:12, 26 August 2022
Goatools
[[Category:Software]][[Category:Biology]]

3 KB (309 words) - 03:26, 2 January 2023
VDJtools
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:29, 6 December 2019
GapFiller
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (331 words) - 16:52, 15 August 2022
LIQA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 20:03, 15 August 2022
QOS Limits
CPU cores, Memory (RAM), GPU accelerators, software licenses, etc. are referred to as '''Trackable Resources''' (TRES) by the s

4 KB (598 words) - 03:35, 26 February 2023
GCT
[[Category:Software]][[Category:File Management]][[Category:Utility]] The GCT is a nascent effort to provide community-based support for critical software packages for grid computing. The GCT is based on a fork of the Globus Toolk

2 KB (290 words) - 13:54, 21 October 2022
CLARK
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (271 words) - 16:28, 10 June 2022
HALC
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (265 words) - 21:20, 6 December 2019
ScGPT
[[Category:Software]]

2 KB (258 words) - 16:01, 7 August 2023
EMAN2
[[Category:Software]][[Category:Image Processing]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}

2 KB (258 words) - 15:00, 15 August 2022
Chromeister
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (245 words) - 19:42, 23 May 2022
USEARCH
[[Category:Software]][[Category:Biology]][[Category:Alignment]][[Category:Sequencing]] |{{#vardefine:exe|}} 

4 KB (559 words) - 17:19, 22 August 2022
VarScan
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...nts a substantial informatics challenge. VarScan is a platform-independent software tool developed at the Genome Institute at Washington University to detect v

3 KB (324 words) - 20:54, 12 August 2022
Kmerfreq
[[Category:Software]]

3 KB (449 words) - 19:28, 12 August 2022
PhyML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:exe|}} 

3 KB (465 words) - 20:22, 12 August 2022
Wub
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] Tools and software library developed by the ONT Applications group

2 KB (250 words) - 17:46, 22 August 2022
BatMeth2
[[Category:Software]]

3 KB (324 words) - 18:57, 17 September 2021
Dammit
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ..., the existing solutions are overly complicated or rely on crappy non-free software.

2 KB (279 words) - 21:20, 6 December 2019
Workbench
[[Category:Software]][[Category:Fluid Dynamics]]

2 KB (286 words) - 15:34, 19 August 2022
R MPI Example
[[Category:Software]][[Category:Compiler]]

3 KB (399 words) - 17:37, 15 August 2022
Miniwdl
[[Category:Software]][[Category:Bioinformatics]]

2 KB (283 words) - 18:55, 1 December 2023
SHARCGS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:De Novo]]

3 KB (313 words) - 22:42, 21 August 2022
ChartDirector
[[Category:Software]][[Category:Data Science]][[Category:Library]]

3 KB (397 words) - 13:26, 15 August 2022
Atom
[[Category:Software]][[Category:Programming]]

2 KB (273 words) - 15:21, 12 August 2022
MetaCluster
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

3 KB (321 words) - 19:26, 18 August 2022
MRIcroGL
[[Category:Software]][[Category:Biology]][[Category:Imaging]]

2 KB (294 words) - 20:33, 24 August 2022
MAFFT
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://mafft.cbrc.jp/alignment/software/}}

2 KB (295 words) - 20:23, 15 August 2022
MiRanda
[[Category:Software]][[Category:Phylogenetics]]

2 KB (278 words) - 21:21, 6 December 2019
Nccl
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:GPU]]

3 KB (293 words) - 20:03, 21 August 2022
IMOD
[[Category:Software]][[Category:Image Processing]] Some of it is GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (414 words) - 14:42, 14 December 2022
Kmcos
[[Category:Software]][[Category:Chemistry]]

2 KB (255 words) - 13:54, 30 April 2024
CAVIAR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (275 words) - 21:17, 6 December 2019
METAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (426 words) - 19:27, 18 August 2022
Jasmine
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 19:09, 15 August 2022
Napari
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 14:23, 19 August 2022
Cyvcf2
[[Category:Software]]

2 KB (260 words) - 14:47, 28 July 2023
Wgs
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

3 KB (375 words) - 20:55, 12 August 2022
Software Development Policies
==External Software Components== ...d to get a security review or risk assessment for such software. Only when software is exposed to the outside world, e.g. as part of PubApps, will a security r

533 bytes (84 words) - 15:43, 19 August 2022
YAK
[[Category:Software]][[Category:Phylogenetics]]

2 KB (293 words) - 16:10, 10 March 2021
ABruijn
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]]

3 KB (354 words) - 20:09, 24 August 2022
Distruct
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 21:20, 6 December 2019
Nextstrain
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 14:56, 2 March 2020
Conpair
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 17:29, 10 June 2022
Gawk
[[Category:Software]][[Category:Utility]] |{{#vardefine:url|https://www.gnu.org/software/gawk/}}

3 KB (356 words) - 16:55, 15 August 2022
Flappie
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 21:20, 6 December 2019
Lingua
[[Category:Software]]

3 KB (299 words) - 20:02, 15 August 2022
ClinicaDL
[[Category:Software]][[Category:Biology]][[Category:imaging]][[Category:Machine Learning]] ...data with deep learning methods. ClinicaDL install includes the 'clinica' software platform for clinical research studies involving patients with neurological

3 KB (323 words) - 13:41, 15 August 2022
Crass
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (300 words) - 14:02, 15 August 2022
NMRPipe
[[Category:Software]][[Category:Biology]] NMRPipe is an extensive software system for processing, analyzing, and exploiting NMR spectroscopic data. An

3 KB (325 words) - 15:55, 23 August 2022
OMindel
[[Category:Software]][[Category:Phylogenetics]]

2 KB (238 words) - 19:51, 31 May 2022
GHOST-MP
[[Category:Software]][[Category:Phylogenetics]]

2 KB (285 words) - 20:11, 7 May 2020
TEToolkit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (259 words) - 20:46, 12 August 2022
Glog
[[Category:Software]][[Category:Web]][[Category:Library]]

2 KB (269 words) - 17:10, 15 August 2022
CRISP
[[Category:Software]][[Category:Phylogenetics]] CRISP is a software program to detect SNPs and short indels from pooled sequencing data. CRISP

3 KB (342 words) - 21:01, 6 December 2019
PfamScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (335 words) - 20:19, 12 August 2022
RMATS-turbo
[[Category:Software]]

2 KB (292 words) - 18:14, 8 March 2022
PRANK
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (271 words) - 20:25, 12 August 2022
FastML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (312 words) - 18:54, 12 August 2022
Apptainer
[[Category:Software]][[Category:Workflow Automation]] or even create a shell in the software environment provided by the container with

4 KB (609 words) - 16:30, 12 February 2024
Exonerate
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (303 words) - 18:53, 12 August 2022
RagTag
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 15:27, 13 August 2020
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
Intel MPI
[[Category:Software]][[Category:Programming]][[Category:Programming]][[Category:Library]] |{{#vardefine:url|https://software.intel.com/en-us/intel-mpi-library}}

3 KB (297 words) - 12:01, 26 August 2022
Shasta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (402 words) - 21:24, 6 December 2019
ClonalFrameML
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] ClonalFrameML is a software package that performs efficient inference of

3 KB (348 words) - 13:47, 15 August 2022
Consulting
* Get priority help with software, hardware, coding, or architecture

2 KB (378 words) - 18:33, 13 June 2023
W2rap-contigger
[[Category:Software]][[Category:biology]][[Category:genomics]]

2 KB (246 words) - 21:29, 6 December 2019
SHAPE-MaP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (325 words) - 17:25, 10 June 2022
Mikado
[[Category:Software]]

4 KB (495 words) - 19:45, 18 August 2022
GeneRax
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:25, 12 October 2020
DeFusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 22:22, 26 August 2020
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
MIGRATE-N
[[Category:Software]][[Category:Genomics]][[Category:Biology]] |{{#vardefine:exe|1}} 

5 KB (636 words) - 16:05, 22 December 2022
Ctk
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (297 words) - 16:53, 10 October 2022
SHAPEIT
[[Category:Software]][[Category:Biology]][[Category:Variant Calling]]

2 KB (263 words) - 12:56, 15 August 2022
LRBinner
[[Category:Software]]

5 KB (527 words) - 14:45, 14 December 2022
Category:Performance Analysis
[[Category:Software]]

10 members (0 subcategories, 0 files) - 19:52, 22 August 2022
Shustring
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (237 words) - 14:55, 10 June 2022

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