The LCModel package is for the automatic quantitation of in vivo proton MR spectra.
module spider LCModel to find out what environment modules are available for this application.
- HPC_LCMODEL_DIR - installation directory
Due to this application's design, HiperGator does not longer support module maintenance for LCModel. It's recommended that users install and run this software locally by following instructions posted at http://s-provencher.com/lcm-test.shtml
. For GUI use, follow instructions from an Open OnDemand terminal.
Example control file ("test.control"):
Expand this section to view example file.
OWNER='Biomedizinische NMR Forschungs GmbH, Goettingen'
TITLE='FIGURE 1: Test Data (white matter, 2.0 T, STEAM, TE/TM=20/30 ms).'
ratipm = 2.0
$ lcmodel < ./test.control
OOD desktop -> start a terminal
Get the lcm-64.tar file from http://s-provencher.com/pub/LCModel/programs/lcm-64.tar.
~$ wget http://s-provencher.com/pub/LCModel/programs/lcm-64.tar
~$ tar xvf lcm-64.tar
Load evince pdf viewer
~$ ml ubuntu
Run the installer
At this point you have
Create symlinks to those executables in your
~/bin directory for convenience. Now, they are both in your
$PATH and can be called on the command-line interactively or from job scripts.