LCModel

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Description

LCModel website  

The LCModel package is for the automatic quantitation of in vivo proton MR spectra.

Environment Modules

Run module spider LCModel to find out what environment modules are available for this application.

System Variables

  • HPC_LCMODEL_DIR - installation directory

Additional Information

Manual:

http://s-provencher.com/pub/LCModel/manual/manual.pdf

Example control file ("test.control"):

$LCMODL
OWNER='Biomedizinische NMR Forschungs GmbH, Goettingen'
KEY(1)=0
TITLE='FIGURE 1:  Test Data (white matter, 2.0 T, STEAM, TE/TM=20/30 ms).'
ratipm = 2.0
ltable=7, filtab='/data/apps/tests/lcmodel/output/test.table'
lprint=6, filpri='/data/apps/tests/lcmodel/output/test.dump'
FILBAS='/data/apps/tests/lcmodel/output/test.basis'
FILRAW='/data/apps/tests/lcmodel/raw/test.RAW'
FILPS='/data/apps/tests/lcmodel/test.ps'
nameac(2)='NAAG'
neach=2  nameac(1)='NAA'
NUNFIL=2048, DELTAT=.0005
HZPPPM=84.47
$END

Tested using:

$ lcmodel < ./test.control