Genblastg

Description

genblastg website  

genBlast is a program suite, consisting of two programs: genBlastA and genBlastG. genBlastA parses local alignments, or high-scoring segment pairs (HSPs) produced by local sequence alignment programs such as BLAST and WU-BLAST and identify groups of HSPs.

Environment Modules

Run module spider genblastg to find out what environment modules are available for this application.

System Variables

• HPC_GENBLASTG_DIR - installation directory
• HPC_GENBLASTG_BIN - executable directory

Additional Information

To view usage information:

$ module load genblastg

$ genblastG

Citation

If you publish research that uses genblastg you have to cite it as follows:

Rong She, Jeffrey Shih-Chieh Chu, Bora Uyar, Jun Wang, Ke Wang, Nansheng Chen, genBlastG: using BLAST searches to build homologous gene models, Bioinformatics, Volume 27, Issue 15, August 2011, Pages 2141–2143, https://doi.org/10.1093/bioinformatics/btr342