Stampy

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Description

stampy website  

Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in particular for those containing insertions or deletions. It can map reads from a highly divergent species to a reference genome for instance. Stampy achieves high sensitivity and speed by using a fast hashing algorithm and a detailed statistical model.

Required Modules

Serial

  • gcc/5.2.0
  • stampy

System Variables

  • HPC_STAMPY_DIR - installation directory
  • HPC_STAMPY_BIN - executable directory