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smartdenovo website  

SMARTdenovo is a de novo assembler for PacBio and Oxford Nanopore (ONT) data. It produces an assembly from all-vs-all raw read alignments without an error correction stage. It also provides tools to generate accurate consensus sequences, though a platform dependent consensus polish tools (e.g. Quiver for PacBio or Nanopolish for ONT) are still required for higher accuracy.

Environment Modules

Run module spider smartdenovo to find out what environment modules are available for this application.

System Variables

  • HPC_SMARTDENOVO_DIR - installation directory
  • HPC_SMARTDENOVO_BIN - executable directory