This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for the interpretation, visualization, and reuse of pangenome variation graphs.
module spider pggb to find out what environment modules are available for this application.
- HPC_PGGB_DIR - installation directory
- HPC_PGGB_BIN - executable directory