Plotsr generates high-quality visualisation of synteny and structural rearrangements between multiple genomes. For this, it uses the genomic structural annotations between multiple chromosome-level assemblies.
module spider plotsr to find out what environment modules are available for this application.
- HPC_PLOTSR_DIR - installation directory
If you publish research that uses plotsr you have to cite it as follows:
Manish Goel, Korbinian Schneeberger, plotsr: visualizing structural similarities and rearrangements between multiple genomes, Bioinformatics, 2022; btac196, https://doi.org/10.1093/bioinformatics/btac196