Jasmine
Jump to navigation
Jump to search
Description
This tool is used to merge structural variants (SVs) across samples. Each sample has a number of SV calls, consisting of position information (chromosome, start, end, length), type and strand information, and a number of other values. Jasmine represents the set of all SVs across samples as a network, and uses a modified minimum spanning forest algorithm to determine the best way of merging the variants such that each merged variants represents a set of analogous variants occurring in different samples.
Environment Modules
Run module spider jasmine to find out what environment modules are available for this application.
System Variables
- HPC_JASMINE_DIR - installation directory
- HPC_JASMINE_BIN - executable directory