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slamdunk website  

SlamDunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis. Diagnostic plotting features and our MultiQC plugin will make your SLAMseq data ready for immediate QA and interpretation.

Environment Modules

Run module spider slamdunk to find out what environment modules are available for this application.

System Variables

  • HPC_SLAMDUNK_DIR - installation directory
  • HPC_SLAMDUNK_BIN - executable directory


If you publish research that uses slamdunk you have to cite it as follows:

Neumann, T., Herzog, V. A., Muhar, M., Haeseler, von, A., Zuber, J., Ameres, S. L., & Rescheneder, P. (2019).