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clinicadl website  

ClinicaDL is a framework for the reproducible processing of neuroimaging data with deep learning methods. ClinicaDL install includes the 'clinica' software platform for clinical research studies involving patients with neurological and psychiatric diseases and the acquisition of multimodal data (neuroimaging, clinical and cognitive evaluations, genetics...), most often with longitudinal follow-up.

Clinica is command-line driven and written in Python. It uses the Nipype system for pipelining and combines widely-used software packages for neuroimaging data analysis (ANTs, FreeSurfer, FSL, MRtrix, PETPVC, SPM), machine learning (Scikit-learn) and the BIDS standard for data organization.

Environment Modules

Run module spider clinicadl to find out what environment modules are available for this application.

System Variables

  • HPC_CLINICADL_DIR - installation directory