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  • [[Category:Software]][[Category:Genomics]][[Category:Bioinformatics]]
    3 KB (326 words) - 21:20, 6 December 2019
  • [[Category:Software]]
    3 KB (359 words) - 13:41, 17 September 2021
  • [[Category:Software]]
    1 KB (144 words) - 20:16, 21 June 2017
  • [[Category:Software]][[Category:Chemistry]][[Category:Bioinformatics]]
    2 KB (285 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] RAiSD (Raised Accuracy in Sweep Detection) is a stand-alone software implementation of the μ statistic for selective sweep detection. Unlike ex
    2 KB (292 words) - 17:38, 14 July 2020
  • [[Category:Software]][[Category:Machine Learning]]
    2 KB (289 words) - 19:14, 7 April 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (335 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Library]]
    2 KB (296 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Scripts]]
    2 KB (242 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    3 KB (337 words) - 15:42, 5 April 2018
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:Sequencing]]
    3 KB (328 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    3 KB (474 words) - 21:01, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    2 KB (233 words) - 21:19, 6 December 2019
  • [[Category:Software]][[Category:Physics]] COMSOL Multiphysics® is a general-purpose simulation software for modeling designs, devices, and processes in all fields of engineering,
    2 KB (293 words) - 22:08, 26 August 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (269 words) - 13:51, 14 May 2021
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]]
    3 KB (434 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:biology]][[Category:bioinformatics]] |{{#vardefine:url|https://sco.h-its.org/exelixis/web/software/parsimonator/index.html}}
    2 KB (257 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (258 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    3 KB (387 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:RNA-Seq]]
    3 KB (309 words) - 21:19, 6 December 2019
  • [[Category:Software]]
    2 KB (219 words) - 20:30, 2 August 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}
    3 KB (324 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Grid]] The GCT is a nascent effort to provide community-based support for critical software packages for grid computing. The GCT is based on a fork of the Globus Toolk
    2 KB (287 words) - 22:05, 27 August 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (305 words) - 18:57, 20 October 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (301 words) - 21:19, 6 December 2019
  • [[Category:Software]]
    3 KB (426 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (329 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Optimizer]]
    2 KB (268 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:phylogenetics]]
    3 KB (306 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.
    3 KB (331 words) - 21:11, 6 December 2019
  • [[Category:Software]]
    2 KB (266 words) - 21:16, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] Tools and software library developed by the ONT Applications group
    2 KB (246 words) - 14:39, 4 September 2020
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (366 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Library]][[Category:Math]]
    2 KB (302 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (424 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Languages]]
    3 KB (418 words) - 22:24, 24 February 2021
  • [[Category:Software]][[Category:Biology]]
    2 KB (247 words) - 21:29, 6 December 2019
  • [[Category:Software]] Installation notes for software that requires additional attention or non-standard procedures.
    0 members (0 subcategories, 0 files) - 03:18, 12 September 2012
  • [[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    2 KB (301 words) - 21:31, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (292 words) - 22:47, 8 September 2020
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (297 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (288 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (319 words) - 21:18, 6 December 2019
  • [[Category:Software]]
    7 members (0 subcategories, 0 files) - 18:18, 7 July 2017
  • [[Category:Software]][[Category:library]]
    2 KB (259 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    4 KB (575 words) - 21:31, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:Phylogenetics]]
    3 KB (398 words) - 21:10, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Sequencing]]
    2 KB (247 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Visualization]]
    2 KB (248 words) - 15:02, 5 February 2020
  • [[Category:Software]]
    3 KB (353 words) - 17:42, 19 October 2021
  • [[Category:Software]][[Category:Biology]][[Category:Population Genetics]]
    2 KB (246 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:biology]][[Category:sequencing]]
    3 KB (304 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (315 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    3 KB (297 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    3 KB (384 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]]
    3 KB (434 words) - 21:22, 6 December 2019
  • [[Category:Software]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    3 KB (386 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    4 KB (519 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (304 words) - 19:53, 20 April 2020
  • [[Category:Software]]
    3 KB (304 words) - 21:49, 3 February 2021
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]] ...7) for our evalution and showing the application of the algorithms and the software on multiple diploid genomes. You can find more information here: https://gi
    3 KB (302 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Shell]][[Category:Screeb]][[Category:Terminal]]
    3 KB (317 words) - 21:09, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (326 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Software]][[Category:Software]] PROJ is a generic coordinate transformation software, that transforms coordinates from one coordinate reference system (CRS) to
    2 KB (281 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (362 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    2 KB (288 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (266 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Statistics]]
    1 KB (218 words) - 17:05, 12 October 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (257 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (306 words) - 13:54, 12 August 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (374 words) - 14:09, 23 April 2021
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:Sequencing]]
    2 KB (260 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]]
    3 KB (314 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (260 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (268 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (258 words) - 21:05, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    2 KB (303 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    3 KB (369 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (246 words) - 22:22, 26 August 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (245 words) - 13:48, 10 June 2021
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (304 words) - 13:41, 11 October 2021
  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]]
    3 KB (300 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Imaging]]
    2 KB (243 words) - 21:06, 6 December 2019
  • [[Category:Software]][[Category:Programming]][[Category:Python]]
    3 KB (363 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (432 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]]
    3 KB (309 words) - 21:09, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (284 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Software]] ...://www.pnas.org/content/102/43/15545.abstract To cite your use of the GSEA software, a joint project of UC San Diego and Broad Institute, please reference Subr
    2 KB (296 words) - 22:17, 27 August 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (312 words) - 15:28, 16 November 2021
  • [[Category:Software]][[Category:Biology]][[Category:Sequencing]]
    2 KB (268 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:math]][[Category:library]]
    2 KB (253 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (310 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|https://www.genetics.ucla.edu/software/admixture/index.html}}
    3 KB (365 words) - 21:05, 6 December 2019
  • [[Category:Software]][[Category:Fluid Dynamics]]
    2 KB (273 words) - 21:29, 6 December 2019
  • [[Category:Software]]
    4 KB (547 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Physics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    2 KB (266 words) - 21:31, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (352 words) - 22:20, 8 September 2020
  • [[Category:Software]][[Category:Library]] ...arallel and scales to hundreds of thousands of processor cores. It is free software released under GNU General Public Licence version 2, or (at your option) an
    3 KB (318 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    3 KB (360 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] Utilities for the MetaSUB Consortium. Free software: MIT license.
    2 KB (247 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]] PolyPhen-2 (Polymorphism Phenotyping v2) is a software tool which predicts possible impact of amino acid substitutions on the stru
    2 KB (284 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Quantum Chemistry]]
    3 KB (428 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category: Tetrahedral Meshes 3D]] |{{#vardefine:url|http://wias-berlin.de/software/tetgen}}
    2 KB (253 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Imaging]]
    3 KB (324 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (326 words) - 14:15, 17 September 2020
  • [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]
    3 KB (334 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (329 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Library]] ...M. Lozhnikov, Y. Mentekidis, S. Ghaisas, S. Zhang. Journal of Open Source Software 3:26, 2018.]
    3 KB (301 words) - 19:43, 15 December 2020
  • [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:GUI Apps]]
    3 KB (327 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:spark]]
    9 KB (1,267 words) - 21:20, 2 August 2021
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    2 KB (311 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Bioinformatics]]
    3 KB (295 words) - 21:13, 6 December 2019
  • [[Category:Software]]
    3 KB (318 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (322 words) - 16:07, 21 February 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (309 words) - 15:35, 2 December 2020
  • [[Category:Software]][[Category:unarchiver]][[Category:utility]]
    2 KB (241 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://rna.igmors.u-psud.fr/Software/erpin.php}}
    3 KB (377 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Spectroscopy]] Crux is a software toolkit for tandem mass spectrometry analysis, with a focus on peptide iden
    3 KB (293 words) - 21:07, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]
    3 KB (416 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    3 KB (369 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]]
    3 KB (387 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Python]]
    2 KB (252 words) - 17:47, 4 May 2020
  • [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://ctg.cncr.nl/software/magma}}
    2 KB (273 words) - 19:35, 23 February 2021
  • [[Category:Software]]
    2 KB (292 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Neurology]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
    3 KB (358 words) - 20:53, 6 December 2019
  • [[Category:Software]][Category:Phylogenetics]]
    3 KB (350 words) - 13:02, 4 June 2020
  • [[Category:Software]]
    3 KB (317 words) - 13:44, 19 March 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (265 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Math]] Dynare is a software platform for handling a wide class of economic models, in particular dynami
    3 KB (382 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (351 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]] NGSUtils is a suite of software tools for working with next-generation
    3 KB (287 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]]
    2 KB (285 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Git]]
    3 KB (296 words) - 16:07, 12 October 2021
  • [[Category:Software]][[Category:Statistics]][[Category:Statistics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
    2 KB (250 words) - 21:31, 6 December 2019
  • [[Category:Software]][[Category:Software]]
    2 KB (279 words) - 21:50, 26 August 2020
  • [[Category:Software]]
    3 KB (313 words) - 11:44, 5 May 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (367 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:programming languages]][[Category:development]][[Category:perfo
    2 KB (295 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (279 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
    3 KB (297 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (276 words) - 21:07, 6 December 2019
  • [[Category:Software]]
    3 KB (378 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
    4 KB (476 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Math]]
    2 KB (286 words) - 21:53, 27 August 2020
  • [[Category:Software]]
    3 KB (377 words) - 12:01, 1 July 2021
  • [[Category:Software]][[Category:Biology]][[Category:NGS]]
    2 KB (235 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|https://www.gnu.org/software/gv/}}
    2 KB (298 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new alg
    3 KB (287 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] bcl2fastq conversion software can be used to both demultiplex data and
    3 KB (328 words) - 21:15, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (326 words) - 21:22, 6 December 2019
  • [[Category:Software]][[Category:NGS]][[Category:Bioinformatics]] PerM is a software package which was designed to perform highly efficient genome scale alignme
    3 KB (394 words) - 21:23, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]]
    3 KB (314 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (383 words) - 13:27, 31 August 2020
  • [[Category:Software]] |{{#vardefine:url|http://www.phidot.org/software/mark/index.html}}
    2 KB (314 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Library]][[Category:Math]] Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale ​nonlinear optimization.
    2 KB (261 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    3 KB (319 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:NGS]] Due to restrictive license on this software it is only available for installation by request.
    3 KB (371 words) - 21:29, 6 December 2019
  • ...tegory:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:Software]] |{{#vardefine:url|http://cab.spbu.ru/software/spades/}}
    2 KB (245 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Programming]] |{{#vardefine:url|http://software.intel.com/en-us/intel-composer-xe/}}
    3 KB (327 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] ...change significantly from one version to another. If you want to use this software, please stay up to date with the list of known issues: [https://github.com/
    3 KB (305 words) - 21:02, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.bioinf.uni-leipzig.de/Software/metilene/}}
    3 KB (373 words) - 22:32, 8 September 2020
  • [[Category:Software]][[Category:Biology]][[Category:Sequencing]]
    3 KB (293 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Genomics]]
    2 KB (258 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Editors]]
    2 KB (287 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://ncmi.bcm.edu/ncmi/software/counter_222/software_130}}
    2 KB (255 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:biology]][[Category:bioinformatics]] |{{#vardefine:url|http://www.cibiv.at/software/triplec/}}
    3 KB (310 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    2 KB (222 words) - 21:20, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Imaging]] TrackVis is a software tool that can visualize and analyze fiber track data from diffusion MR imag
    3 KB (414 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (259 words) - 19:52, 29 September 2020
  • [[Category:Bioinformatics]][[Category:Software]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
    4 KB (538 words) - 15:44, 1 March 2021
  • [[Category:Software]][[Category:Biology]][[Category:Biology]]
    3 KB (330 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:LiDAR]]
    2 KB (292 words) - 15:59, 14 January 2020
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (279 words) - 00:09, 29 October 2020
  • [[Category:Software]][[Category:Biology]][[Category:NGS]]
    3 KB (325 words) - 21:29, 6 December 2019
  • [[Category:Software]][[Category:library]][[Category:c++]]
    3 KB (350 words) - 21:24, 6 December 2019
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    3 KB (292 words) - 21:21, 6 December 2019
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]][[Category:Metagenomics]]
    4 KB (461 words) - 21:20, 6 December 2019
  • [[Category:Software]]
    6 members (0 subcategories, 0 files) - 16:22, 19 September 2014
  • ...names below or view a [[Installed_Software|complete list of the installed software]].
    452 members (17 subcategories, 0 files) - 18:49, 2 August 2021
  • [[Category:Software]][[Category:Phylogenetics]]
    2 KB (274 words) - 16:05, 16 March 2020
  • [[Category:Software]][[Category:Biology]]
    2 KB (244 words) - 20:44, 27 January 2021
  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]
    2 KB (247 words) - 21:15, 6 December 2019
  • [[Category:Software]]
    4 KB (608 words) - 23:49, 21 April 2021
  • [[Category:Software]][[Category:Biology]][[Category:NGS]]
    2 KB (293 words) - 21:21, 6 December 2019
  • ...l need to connect to the UF campus network using AnyConnect VPN or similar software. Please see: https://vpn.ufl.edu for additional information.
    460 bytes (76 words) - 20:06, 2 August 2021
  • [[Category:Software]][[Category:Bioinformatics]][[Category:Alignment]] |{{#vardefine:exe|1}} <!--Present manual instructions for running the software -->
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  • [[Category:Software]][[Category:Geospatial]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
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  • [[Category:Software]] Statistical software
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  • [[Category:Software]] ...cs processing unit (GPU). With millions of CUDA-enabled GPUs sold to date, software developers, scientists and researchers are finding broad-ranging uses for G
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  • [[Category:Software]] The software foobarbaz is a really wonderful tool that lets you tie your shoelaces remot
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  • [[Category:Software]][[Category:Programming]] ...it simpler to solve even the most complex multi-threaded or multi-process software problems. This installation Includes Arm DDT, MAP for performance analysis,
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  • [[Category:Software]] '''BAli-phy''' is MCMC software developed by Ben Redelings with Marc Suchard for simultaneous Bayesian esti
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  • ==Intel Software Tools Technical Webinar Series== ...n information is available [http://software.intel.com/en-us/articles/intel-software-tools-technical-webinar-series here].
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:Spectroscopy]] ...ave to run it in a gui session under SLURM and use [http://xpra.org/ Xpra] software to connect to the session. See our [[Xpra|Xpra on HiPerGator]] documentatio
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  • [[Category:Software]][[Category:Math]][[Category:Language]] ...TLAB Runtime enable you to create and distribute numerical applications or software components quickly and securely.
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  • [[Category:Software]][[Category:Biology]][[Category:RNA]] Z. Weinberg and R. R. Breaker. R2R—software to speed the depiction of aesthetic consensus
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  • ...ng data files in any analyses run on HiPerGator. It is permissible to keep software builds, conda environments, text documents, and valuable scripts in $HOME a
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  • [[Category:Software]] Desmond is a software package developed at D. E. Shaw Research to perform high-speed molecular dy
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  • [[Category:Software]][[Category:Geospatial]] ...ort System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, g
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]][[Category:Genomics]] |{{#vardefine:url|http://www.sanger.ac.uk/resources/software/dindel/}}
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  • [[Category:Software]][[Category:Biology]][[Category:Bioinformatics]] neuroimaging software and facilitates interaction between these packages
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  • [[Category:Software]][[Category:Phylogenetics]] https://github.com/Gaius-Augustus/BRAKER#citing-braker-and-software-called-by-braker
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  • [[Category:Software]][[Category:Structural Biology]] AtomEye is free atomistic visualization software for all major UNIX platforms. It is based on a newly developed graphics cor
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  • [[Category:Software]][[Category:Simulation]] MIKE is a range of software products for accurately modeling and simulating any type of challenges in w
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  • [[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://www.cbcb.umd.edu/software/quake/}}
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  • [[Category:Software]][[Category:Geometry]] ...for complex FEA and CFD simulation. It is based on the time-proven CUBIT™ software from Sandia National Laboratories. For more than two decades, csimsoft and
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  • [[Category:Software]][[Category:GNU]][[Category:Terminal Multiplerxer]] |{{#vardefine:url|https://www.gnu.org/software/screen/}}
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] SHRiMP is a software package for aligning genomic reads against a target genome. It was primaril
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  • ...the latest or the default version of the module and be able to execute the software is 'module load <application>'. For instance, if the module is called '''nc ...would continue loading NCBI BLAST version 2.2.28 even after we update the software.|warn}}
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  • [[Category:Software]] Please see: Open-CRAVAT Docs for installation instructions and software documentation.
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  • ...he 755 mode for the directory and 644 for the files either from within the software you used for transferring the files or by logging into HPC and running the
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  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] SHEsisPlus is a a software package for analysis of genetic association, Hardy-weinberg equilibrium, li
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  • [[Category:Software]][[Category:Bioinformatics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
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  • [[Category:Software]][[Category:Phylogenetics]] ...and specificity of 97%, directly from uncorrected raw sequence reads. The software is written in Python and is available under the open source license GNU GPL
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] |{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
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  • [[Category:Software]][[Category:Matlab]] CONN is an open-source Matlab/SPM-based cross-platform software for the computation, display, and analysis of functional connectivity Magne
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  • [[Category:Software]][[Category:Phylogenetics]] This is a software to detect the shift pattern of DNA substitution rate of a genomic region an
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  • [[Category:Software]][[Category:Infrastructure]] The [https://software.intel.com/en-us/intel-parallel-studio-xe Intel Compiler Suite] provides For
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  • [[Category:Software]][[Category:Biology]][[Category:NGS]] DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:Ecology]] ...for Quantitative Insights Into Microbial Ecology. QIIME is an open source software package for comparison and analysis of microbial communities, primarily bas
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  • [[Category:Software]][[Category:Biology]][[Category:NGS]] MaxBin is software for binning assembled metagenomic sequences based on an Expectation-Maximiz
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  • [[Category:Software]] |{{#vardefine:url|http://www.helsinki.fi/bsg/software/BAPS/}}
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    0 members (0 subcategories, 0 files) - 18:46, 10 August 2012
  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] |{{#vardefine:url|http://ccb.jhu.edu/software/kraken/}}
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  • [[Category:Software]][[Category:Programming]] This module enables the use of the Doxygen software
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] |{{#vardefine:url|http://mafft.cbrc.jp/alignment/software/}}
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  • ...use this guide to install a small personal python module or a python-based software package that is packaged with distutils i.e. you install it with '<code>pyt ...to install the software into a non-standard location. With when installing software packaged with distutils this is most often accomplished by specifying the '
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  • iMOKA is a software that enables a comprehensive analysis of sequencing data Lorenzi, C., Barriere, S., Villemin, J. et al. iMOKA: k-mer based software to analyze large collections of sequencing data. Genome Biol 21, 261 (2020)
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  • [[Category:Software]][[Category:Library]] MPE is a software package for MPI (Message Passing Interface) programmers. The package provid
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  • [[Category:Software]][[Category:Languages]] |{{#vardefine:url|http://www.gnu.org/software/parallel/}}
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  • [[Category:Software]][[Category:Phylogenetics]] This software and the accompanying database are designed to find acquired antimicrobial r
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  • [[Category:Software]] ...teur.fr/en/publication/bmge-block-mapping-and-gathering-with-entropy-a-new-software-for-selection-of-phylogenetic-informative-regions-from-multiple-sequence-al
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  • [[Category:Software]][[Category:Biology]][[Category:Genomics]] This software performs association testing between local haplotypes and phenotypes at eac
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  • [[Category:Software]][[Category:Library]][[Category:OpenGIS]]
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] ...ed genotypes. This is especially useful for low and medium depth data. The software is written in C++ and has been used on large sample sizes.
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  • [[Category:Software]][[Category:Phylogenetics]] GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related mode
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  • [[Category:Software]][[Category:Library]] MountainSort (a component of MountainLab) is spike sorting software developed by Jeremy Magland, Alex Barnett, and Leslie Greengard at the Cent
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  • [[Category:Software]][[Category:Biology]] pb-assembly is a collection of PacBio software including the following applications and their dependencies:
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  • [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] Software for Computational Analysis of gene Family Evolution
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  • [[Category:Software]][[Category:Biology]][[Category:RNA-Seq]][[Category:Sequence Assembly]] ...ur data and could explain all observed splicing events of each locus. This software is free to use, modify, redistribute without any restrictions, except inclu
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  • [[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]] Oliver Eulenstein, "iGTP: A software package for large-scale gene tree
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  • [[Category:Software]][[Category:Statistics]][[Category:Bioinformatics]][[Category:Neurology]][[ |{{#vardefine:url|http://www.fil.ion.ucl.ac.uk/spm/software/spm8/}}
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