Samblaster

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Description

samblaster website  

samblaster is a fast and flexible program for marking duplicates in read-id sorted paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file.

When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.

Required Modules

Serial

  • samblaster

System Variables

  • HPC_SAMBLASTER_DIR - installation directory
  • HPC_SAMBLASTER_DIR - executable directory





Validation

  • Validated 4/5/2018