Category:Software
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Overview
Software provided by the UF Research Computing. There is a complete list of the installed software or you can browse through the sub-categories or software package names in the table below.
Software pages and documentation not listed in the table include:
Read Daemons to find out how to run programs as long-running processes in the background a.k.a 'daemons'.
Install a Perl module into your home directory for personal use.
See the available Math Libraries.
Add New App
To add a documentation page for a new piece of software installed into /apps please go to Add New App Page.
Subcategories
This category has the following 45 subcategories, out of 45 total.
A
B
C
D
F
G
I
K
M
N
P
S
V
W
Pages in category "Software"
The following 200 pages are in this category, out of 1,787 total.
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A
- AbInit
- ABRicate
- ABruijn
- ABySS
- Adapterremoval
- AdapterRemoval
- ADMB
- AdmixTools
- ADMIXTURE
- AEGeAn
- AFNI
- AfterQC
- Agalma
- AGAT
- AGfusion
- AGOUTI
- AI Support
- Albacore
- ALE
- ALFA
- AliStat
- ALLMAPS
- ALLPATHS-LG
- Alphagenes
- Alphaimpute
- AltAnalyze
- AMAS
- AMBER
- Amber Job Sample Scripts
- AMICO
- AMOS
- AMP
- AMPHORA2
- Amphora2
- AMPtk
- AMRPlusPlus
- Amuse
- Amuse samples
- ANGEL
- Angsd
- ANGSD
- Annocript
- AnnoTALE
- ANNOVAR
- Ansible
- Ansysem
- AntiSMASH
- ANTs
- Anvio
- Applications
- Applications cleanup
- APT
- ARC
- ArcGIS
- ARCS
- Aria2
- ARIBA
- ARKS
- Armadillo
- ARPACK
- ArrayFire
- ART
- ASE-ANI
- ASHS
- ASPECT
- Assembly-stats
- Assemblytics
- Assexon
- AStalavista
- ASTRAL
- Astral
- ASTRID
- Astropy
- Atac
- ATAT
- ATLAS
- AtomEye
- AtomMan
- ATRAM
- ATram
- Augustus
- Auto3DEM
- AutoDock
- Autometa
- Azoo
B
- Badread
- BALI-PHY
- BALI-PHY SLURM
- BAM-matcher
- Bam-readcount
- Bam-Readcount
- Bamaddrg
- BamBam
- BAMM
- Bamstats
- Bamsurgeon
- Bamtofastq
- Bamtools
- BamUtil
- BAPS
- Barrnap
- Basemount
- Bashdb
- BatVI
- Bax2bam
- BayArea
- Bayenv
- BayesAss
- BayeScan
- BayeScEnv
- BayesR
- BayesRate
- Baypass
- BBMap
- Bcbio-nextgen
- Bcftools
- Bcl2fastq
- BDG-SeQuila
- BEAGLE
- BEAR
- BEAST
- BEAST2-XML
- BEDOPS
- Bedops
- BEDTools
- Bertini
- BESST
- BEST
- BETA
- BFAST
- Bifrost
- BIGSI
- BinPacker
- BinSanity
- Bioawk
- BioBakery
- Bioconductor
- Biodiverse
- Biolite
- BIOM
- BioMart
- BIOMART
- BiSCoT
- Bismark
- Blackfynn
- BLASR
- Blast
- Blast2GO
- Blast2GO CLI
- BLAT
- Blender
- BLESS
- Blitz
- BlobTools
- Bloomfiltertrie
- BloomTree
- BLUPF90
- BOLT-LMM
- BoltzTraP
- Boost
- Booster
- Bowtie
- Bowtie2
- BPGA
- BPP
- Bracken
- Braker
- BRANCH
- BRATNextGen
- BreakDancer
- Breakseq
- Brewery
- Bridger
- BRIG
- BRM
- Bruker2nifti
- Bsmap
- Bsoft
- BSseeker2
- Bubbleparse
- BUCKy
- BUSCO
- BWA
- BWA-PSSM
- BXH XCEDE tools
- Bxh xcede tools
- Byobu
- BYOBU
- Bzip2