Search results

CIMS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (315 words) - 17:21, 10 June 2022
Finesse
[[Category:Software]][[Category:Simulation]] ...aussian beams can be used to model spatial effects. Finesse is open source software distributed for OSX, Linux, and Windows. It has benefited from years of emp

3 KB (347 words) - 00:01, 9 July 2020
Pseudofinder
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 13:41, 11 October 2021
AMPtk
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (289 words) - 12:41, 12 August 2022
VirusDetect
[[Category:Software]][[Category:Phylogenetics]] VirusDetect is a software package that can efficiently and exhaustively analyze large-scale sRNA data

3 KB (377 words) - 23:22, 30 July 2020
Metabolic
[[Category:Software]] This software enables the prediction of metabolic and biogeochemical functional trait pro

3 KB (304 words) - 19:26, 18 August 2022
ElPrep
[[Category:Software]][[Category:Phylogenetics]]

3 KB (345 words) - 21:20, 6 December 2019
Parsnp
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (297 words) - 21:22, 6 December 2019
MISO
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]][[Category:RNA-

3 KB (390 words) - 20:44, 18 August 2022
JACUSA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

2 KB (240 words) - 19:08, 15 August 2022
SCRIPTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://software.broadinstitute.org/software/scripture/}}

3 KB (302 words) - 20:36, 12 August 2022
CFITSIO
[[Category:Software]][[Category:Library]][[Category:Compiler]]

2 KB (291 words) - 13:26, 15 August 2022
Ansible
[[Category:Software]][[Category:Workflow Automation]]

3 KB (348 words) - 14:17, 12 August 2022
Cp2k
[[Category:Software]][[Category:Chemistry]] CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, mole

3 KB (371 words) - 22:15, 26 August 2020
Alienhunter
[[Category:Software]][[Category:Sequencing]][[Category:Biology]]

2 KB (256 words) - 12:34, 12 August 2022
OpenPIV-python
[[Category:Software]][[Category:Programming]][[Category:Imaging]] OpenPIV is open source Particle Image Velocimetry analysis software.

2 KB (291 words) - 12:23, 26 August 2022
Ibdne
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (308 words) - 17:05, 27 May 2022
MCNP
[[Category:Software]][[Category:Physics]] ...message from RSICC’s Request History tool that contains a list all of the software for which you have been licensed to the [[Remote_Support#Email|User Support

3 KB (422 words) - 21:39, 4 April 2024
Peneasy
[[Category:Software]]

4 KB (460 words) - 18:26, 27 May 2022
DAWGPAWS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 21:20, 6 December 2019
IAssembler
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (301 words) - 18:39, 15 August 2022
Guideseq
[[Category:Software]]

2 KB (259 words) - 18:08, 15 August 2022
GFF-Ex
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 22:10, 27 August 2020
Snp2hla
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|https://software.broadinstitute.org/mpg/snp2hla/}}

3 KB (379 words) - 20:42, 12 August 2022
PETSc
[[Category:Software]][[Category:Math]] ...ferential equations. It is the world’s most widely used parallel numerical software library for partial differential equations and sparse matrix computations.

3 KB (337 words) - 15:25, 19 August 2022
Hpsandbox
[[Category:Software]]

2 KB (264 words) - 22:27, 1 February 2023
Monolix
[[Category:Software]][[Category:Modeling]][[Category:Biology]]

2 KB (287 words) - 11:57, 19 August 2022
Oases
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (293 words) - 17:25, 19 August 2022
Mvrsion
[[Category:Software]][[Category:Sequencing]]

2 KB (246 words) - 14:24, 29 November 2022
ShapeMapper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://www.chem.unc.edu/rna/software.html}}

3 KB (387 words) - 21:24, 6 December 2019
HOOMD
[[Category:Software]][[Category:Library]][[Category:Math]]

5 KB (607 words) - 15:40, 6 June 2022
GFOLD
[[Category:Software]][[Category:Biology]][[Category:RNA-Seq]]

3 KB (388 words) - 18:54, 10 June 2022
VarSim
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 14:44, 4 September 2020
Kma
[[Category:Software]][[Category:Library]][[Category:Data Science]]

2 KB (292 words) - 15:51, 30 January 2023
FastML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (312 words) - 18:54, 12 August 2022
Textract
[[Category:Software]]

3 KB (304 words) - 13:55, 21 October 2022
Pygot
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (248 words) - 21:24, 6 December 2019
GenomicTools
[[Category:Software]][[Category:NGS]][[Category:Biology]][[Category:ChIP-Seq]][[Category:RNA-Se

3 KB (385 words) - 18:58, 12 August 2022
Funannotate
[[Category:Software]][[Category:Phylogenetics]] ...t has evolved over time to accomodate larger genomes. The impetus for this software package was to be able to accurately and easily annotate a genome for submi

3 KB (375 words) - 16:51, 15 August 2022
TRNAscan-Se
[[Category:Software]][[Category:biology]][[Category:NGS]] ...nce analysis, but is applicable to other DNAs as well. It applies our COVE software (see below) with a carefully built tRNA covariance model, while getting aro

3 KB (389 words) - 20:53, 12 August 2022
GRASS
[[Category:Software]][[Category:Geospatial]] ...ort System), is a free and open source Geographic Information System (GIS) software suite used for geospatial data management and analysis, image processing, g

5 KB (593 words) - 21:27, 14 December 2022
ClustalO
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (292 words) - 18:36, 12 August 2022
XY-Meta
[[Category:Software]][[Category:Phylogenetics]]

3 KB (308 words) - 16:15, 6 June 2022
Hiphase
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (337 words) - 20:21, 19 March 2024
VS Code Remote Development
* By using the software, you agree to

7 KB (1,100 words) - 17:42, 5 March 2024
Bax2bam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 14:05, 10 December 2019
GroopM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (263 words) - 21:20, 6 December 2019
Fastchaos
[[Category:Software]][[Category:Sequencing]]

2 KB (243 words) - 14:57, 29 July 2022
Screen
[[Category:Software]][[Category:Programming]][[Category:Shell]] |{{#vardefine:url|https://www.gnu.org/software/screen/}}

3 KB (441 words) - 22:30, 21 August 2022
RiboPicker
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (377 words) - 21:50, 21 August 2022
Hyb
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

2 KB (247 words) - 15:07, 10 June 2022
Pufferfish
[[Category:Software]][[Category:Biology]]

3 KB (351 words) - 17:32, 31 July 2023
AutoDock
[[Category:Software]][[Category:Biology]]

2 KB (268 words) - 15:47, 10 June 2022
RNAhybrid
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (285 words) - 20:56, 12 August 2022
GeneMarkS-T
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 17:25, 2 June 2022
Blocked Accounts
* Improper password in various SFTP software clients (FileZilla, etc.)

2 KB (337 words) - 21:37, 29 January 2024
IVA
[[Category:Software]][[Category:Phylogenetics]]

2 KB (300 words) - 16:06, 7 December 2021
BreakDancer
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (301 words) - 21:16, 6 December 2019
FreeBayes
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

2 KB (302 words) - 18:55, 12 August 2022
PICRUSt
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (344 words) - 18:28, 10 June 2022
Freesurfer
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] Starting with freesurfer/6.0.0 the software is available as a Singularity container. To run any executable use the 'lau

3 KB (323 words) - 20:09, 12 August 2022
MiRDP2
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (328 words) - 18:09, 31 May 2022
MOTUs
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 17:44, 1 May 2020
RIGERJ
[[Category:Software]][[Category:Phylogenetics]]

2 KB (260 words) - 21:24, 6 December 2019
SHAPEIT4
[[Category:Software]]

5 KB (617 words) - 19:22, 14 December 2022
SiLiX
[[Category:Software]][[Category:Phylogenetics]] The software package SiLiX (SIngle LInkage Clustering of Sequences) implements a new alg

3 KB (287 words) - 21:24, 6 December 2019
Loter
[[Category:Software]] Dias-Alves, T., Mairal, J., Blum, M.G.B., 2018. Loter: A Software Package to Infer Local Ancestry for a Wide Range of Species. Mol Biol Evol

2 KB (297 words) - 17:15, 20 March 2023
Pybedtools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (263 words) - 13:31, 6 October 2021
RStudio
[[Category:Software]][[Category:Statistics]]

3 KB (461 words) - 19:51, 18 July 2023
PILON
[[Category:Software]][[Category:biology]][[Category:NGS]][[Category:phylogenetics]] Pilon is a software tool which can be used to:

3 KB (321 words) - 20:23, 12 August 2022
Consed
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (348 words) - 18:39, 12 August 2022
BESST
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (332 words) - 12:51, 15 August 2022
Piranha
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://smithlabresearch.org/software/piranha/}}

2 KB (266 words) - 16:02, 10 June 2022
Category:Molecular Dynamics
[[Category:Software]]

16 members (0 subcategories, 0 files) - 15:38, 19 August 2022
Purge haplotigs
[[Category:Software]]

3 KB (356 words) - 20:27, 12 August 2022
Sc-im
[[Category:Software]][[Category:Visualization]][[Category:Utility]]

2 KB (272 words) - 22:07, 21 August 2022
Graph annotation
[[Category:Software]][[Category:Phylogenetics]]

2 KB (276 words) - 21:20, 6 December 2019
GeneMarkS
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (296 words) - 16:45, 27 May 2022
SpliceTrap
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (347 words) - 20:44, 12 August 2022
ReCOGnizer
[[Category:Software]][[Category:Phylogenetics]]

3 KB (327 words) - 17:03, 3 December 2020
Ont tutorial cas9
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 18:38, 2 June 2022
Corset
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...gram to go from a de novo transcriptome assembly to gene-level counts. Our software takes a set of reads that have been multi-mapped to the transcriptome (wher

3 KB (309 words) - 17:09, 10 June 2022
Samba Access
...:''' There is a known issue with the CIFS client in Mac Finder. The Finder software in current version of MacOS does not have a refresh button to update conten

5 KB (816 words) - 17:31, 31 August 2023
KaKs
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

2 KB (281 words) - 19:18, 15 August 2022
EGSnrc
[[Category:Software]][[Category:Phylogenetics]] ...eleased in 2000, as a complete overhaul of the Electron Gamma Shower (EGS) software package originally developed at the Stanford Linear Accelerator Center (SLA

3 KB (327 words) - 14:57, 15 August 2022
Dragonflye
[[Category:Software]][[Category:Sequencing]][[Category:Genomics]] https://github.com/rpetit3/dragonflye#software-included-19

2 KB (283 words) - 20:18, 12 April 2022
PGAP
[[Category:Software]]

3 KB (393 words) - 14:29, 6 July 2022
Ksnp
[[Category:Software]][[Category:biology]][[Category:phylogenetics]][[Category:Variant Calling]] kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds

3 KB (327 words) - 12:56, 15 August 2022
APT
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

3 KB (342 words) - 20:09, 7 May 2024
Merge peaks
[[Category:Software]][[Category:Workflow Automation]]

2 KB (254 words) - 18:51, 15 August 2022
ALLMAPS
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 21:11, 6 December 2019
SortMeRNA
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (299 words) - 17:00, 10 June 2022
PAPI
[[Category:Software]][[Category:Performance Analysis]][[Category:Programming]] |{{#vardefine:exe|}} 

3 KB (360 words) - 16:36, 21 August 2022
Humann2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (348 words) - 22:26, 27 August 2020
CAMP
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (255 words) - 18:00, 23 May 2022
Category:RNA-Seq
[[Category:NGS]][[Category:Software]]

28 members (0 subcategories, 0 files) - 15:28, 23 August 2022
TRITONSERVER
[[Category:Software]][[Category:Machine Learning]]

2 KB (298 words) - 20:06, 21 August 2022
DS9
[[Category:Software]][[Category:Imaging]] This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

3 KB (322 words) - 13:07, 6 June 2022
Jq
[[Category:Software]][[Category:Utility]]

2 KB (241 words) - 19:12, 15 August 2022
DECX
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 17:54, 26 April 2021
Category:Compiler
[[Category:Software]] The [https://software.intel.com/en-us/intel-parallel-studio-xe Intel Compiler Suite] provides For

24 members (0 subcategories, 0 files) - 17:51, 27 September 2023
Localizer
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 20:18, 26 May 2022
DeepPicker
[[Category:Software]][[Category:Imaging]] This software is installed in a container.

2 KB (281 words) - 14:34, 15 August 2022
Meryl
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 22:26, 8 September 2020
Dynasor
[[Category:Software]][[Category:Molecular_Dynamics]]

3 KB (416 words) - 16:47, 27 November 2023
Olego
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (309 words) - 17:44, 19 August 2022
Mlpack
[[Category:Software]][[Category:Library]] ...M. Lozhnikov, Y. Mentekidis, S. Ghaisas, S. Zhang. Journal of Open Source Software 3:26, 2018.]

3 KB (301 words) - 19:43, 15 December 2020
Groovy
[[Category:Software]][[Category:Programming]]

2 KB (281 words) - 21:21, 6 December 2019
Plink
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:Genomics]]

3 KB (342 words) - 20:25, 12 August 2022
Pvconv
[[Category:Software]]

2 KB (265 words) - 21:12, 24 October 2022
Tbb
[[Category:Software]][[Category:library]]

2 KB (259 words) - 21:29, 6 December 2019
Authentication With MFA
...ntually, multiple failures of the password login will lead to our security software blocking your client due to too many incorrect password attempts, and event

6 KB (1,008 words) - 21:10, 14 July 2023
ADMIXTURE
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|https://www.genetics.ucla.edu/software/admixture/index.html}}

3 KB (366 words) - 20:51, 11 August 2022
MasHmap
[[Category:Software]][[Category:Phylogenetics]]

3 KB (359 words) - 17:28, 27 May 2022
Vfuparr
[[Category:Software]][[Category:Sequencing]][[Category:Biology]] ...LURM systems, this workflow allows users to easily incorporate any docking software of their choice, ensuring maximum flexibility.

3 KB (392 words) - 20:35, 9 April 2024
CoMap
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (378 words) - 18:39, 12 August 2022
ACTC
[[Category:Software]][[Category:Biology]]

2 KB (234 words) - 14:36, 7 April 2023
SimSeq
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (283 words) - 22:59, 21 August 2022
Vermouth-martinize
[[Category:Software]][[Category:Phylogenetics]]

3 KB (323 words) - 14:21, 1 November 2021
RNAsalsa
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

3 KB (368 words) - 21:24, 6 December 2019
Category:Alignment
[[Category:Biology]][[Category:Software]]

24 members (0 subcategories, 0 files) - 15:24, 23 August 2022
TrimAl
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Alignment‏]]

2 KB (264 words) - 19:32, 24 August 2022
Fastai
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 18:03, 13 November 2020
Category:Neuroscience
[[Category:Software]]

17 members (0 subcategories, 0 files) - 17:19, 6 June 2022
DSSP
[[Category:Software]][[Category:Molecular Dynamics]] |{{#vardefine:exe|}} 

2 KB (297 words) - 19:51, 13 June 2022
InStruct
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 18:00, 11 March 2020
GUAVA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (351 words) - 21:20, 6 December 2019
Nanocomp
[[Category:Software]][[Category:programming]][[Category:sequencing]]

2 KB (282 words) - 12:22, 26 August 2022
Ucsc-fafiltern
[[Category:phylogenetics]][[Category:Software]]

2 KB (244 words) - 17:11, 22 August 2022
Linksbrowser
[[Category:Software]][[Category:Web]]

2 KB (257 words) - 17:50, 15 August 2022
Maker
[[Category:Software]][[Category:Biology]] |{{#vardefine:url|http://www.yandell-lab.org/software/maker.html}}

3 KB (387 words) - 18:20, 18 August 2022
PASTA
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (381 words) - 19:31, 24 August 2022
MentaLiST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (368 words) - 18:51, 10 June 2022
ImageJ
[[Category:Software]][[Category:Imaging]]

2 KB (268 words) - 20:03, 10 June 2022
Glactools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (247 words) - 15:07, 20 May 2020
MiRge
[[Category:Software]][[Category:Phylogenetics]]

2 KB (279 words) - 21:22, 6 December 2019
Haphpipe
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

3 KB (405 words) - 16:40, 14 March 2023
Genrich
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 21:21, 6 December 2019
Osprey
[[Category:Software]][[Category:Spectroscopy]][[Category:Neuroscience]] Osprey is an all-in-one software suite for state-of-the art processing and quantitative analysis of in-vivo

2 KB (280 words) - 18:01, 19 August 2022
Sourmash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (262 words) - 15:45, 22 August 2022
Pbcore
[[Category:Software]][[Category:biology]]

2 KB (244 words) - 20:16, 12 August 2022
Proteinortho
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://www.bioinf.uni-leipzig.de/Software/proteinortho/index.html}}

2 KB (302 words) - 20:27, 12 August 2022
Giggle
[[Category:Software]]

2 KB (268 words) - 20:58, 24 February 2023
HybPiper
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (349 words) - 18:36, 10 June 2022
UKFractography
[[Category:Software]][[Category:Phylogenetics]]

3 KB (331 words) - 20:13, 1 June 2022
Bsmap
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Biology]] BSMAP is a short reads mapping software for bisulfite sequencing reads. Bisulfite treatment converts unmethylated C

3 KB (304 words) - 18:22, 12 August 2022
Strelka
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (369 words) - 14:24, 10 October 2023
Halla
[[Category:Software]][[Category:Phylogenetics]]

3 KB (367 words) - 13:57, 25 March 2022
Read2tree
[[Category:Software]][[Category:Phylogenetics]] read2tree is a software tool that allows users to obtain alignment matrices for tree inference. It

2 KB (292 words) - 18:42, 12 July 2023
GROMACS
[[Category:Software]][[Category:Chemistry]][[Category:Molecular Dynamics]]

4 KB (556 words) - 19:16, 5 January 2023
S.A.G.E
[[Category:Software]][[Category:Phylogenetics]] is a free software package containing programs for use in the genetic analysis of family, pedi

2 KB (277 words) - 15:17, 10 September 2021
Pangolin
[[Category:Software]][[Category:Phylogenetics]] Software package for assigning SARS-CoV-2 genome sequences to global lineages.

2 KB (249 words) - 15:38, 28 January 2021
IsPcr
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:22, 6 December 2019
Tantan
[[Category:Software]][[Category:NGS]][[Category:Genomics]]

2 KB (280 words) - 19:04, 1 June 2022
CLARK
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (271 words) - 16:28, 10 June 2022
Phyluce
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] phyluce (phy-loo-chee) is a software package that was initially developed for analyzing data collected from ultr

4 KB (517 words) - 18:23, 21 August 2022
FASTphase
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://stephenslab.uchicago.edu/software.html#fastphase}}

2 KB (282 words) - 21:59, 27 August 2020
Structure threader
[[Category:Software]] ...parallelize the runs of Structure, fastStructure, MavericK and ALStructure software.

3 KB (342 words) - 18:56, 3 June 2022
Anchorwave
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (367 words) - 21:10, 20 September 2023
WhatsHap
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] WhatsHap is a software for phasing genomic variants using DNA sequencing reads, also called read-b

2 KB (269 words) - 21:29, 6 December 2019
TetGen
[[Category:Software]][[Category:Modeling]] |{{#vardefine:url|http://wias-berlin.de/software/tetgen}}

2 KB (253 words) - 16:28, 22 August 2022
IVar
[[Category:Software]]

3 KB (335 words) - 18:36, 26 March 2021
LASTZ
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (284 words) - 19:30, 12 August 2022
BatMeth2
[[Category:Software]]

3 KB (324 words) - 18:57, 17 September 2021
Z1Plus
[[Category:Software]]

2 KB (293 words) - 19:36, 6 September 2023
KMC
[[Category:Software]][[Category:Phylogenetics]]

3 KB (343 words) - 14:34, 4 September 2020
FastPlast
[[Category:Software]][[Category:Phylogenetics]]

2 KB (288 words) - 20:23, 23 May 2022
SnpEff
[[Category:Software]][[Category:Biology]][[Category:Annotation]]

4 KB (562 words) - 15:19, 5 January 2023
SQANTI2
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 18:47, 1 June 2022
FAST
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (358 words) - 21:21, 6 December 2019
RADICAL
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://desalle.amnh.org/software.html}}

2 KB (295 words) - 21:28, 21 August 2022
NextDenovo
[[Category:Software]][[Category:Phylogenetics]]

3 KB (312 words) - 18:03, 10 May 2021
Vcflib
[[Category:Software]][[Category:biology]][[Category:genomics]]

3 KB (390 words) - 20:54, 12 August 2022
MAFFT
[[Category:Software]][[Category:Biology]][[Category:Sequencing]] |{{#vardefine:url|http://mafft.cbrc.jp/alignment/software/}}

2 KB (295 words) - 20:23, 15 August 2022
CPLEX
[[Category:Software]][[Category:Climate]] |{{#vardefine:url|http://www-01.ibm.com/software/commerce/optimization/cplex-optimizer/}}

2 KB (264 words) - 19:35, 24 August 2022
MixMHC2pred
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:40, 8 September 2020
Rnaeditingindexer
[[Category:Software]][[Category:Biology]]

2 KB (239 words) - 22:53, 21 January 2024
MRtrix
[[Category:Software]][[Category:Biology]][[Category:Imaging]] ...Jeurissen, C.-H. Yeh, and A. Connelly. MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. NeuroImage, 202 (

3 KB (311 words) - 20:34, 24 August 2022
OMNIVERSE
[[Category:Software]][[Category:GPU]]

2 KB (272 words) - 21:05, 31 May 2023
JVARKIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (251 words) - 21:21, 6 December 2019
OpenCL
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 17:52, 19 August 2022
RepeatAnalysisTools
[[Category:Software]] @software{tange_2021_5013933,

4 KB (430 words) - 16:55, 15 December 2022
SMS
[[Category:Software]][[Category:biology]]

2 KB (267 words) - 20:41, 12 August 2022
CAP3
[[Category:Software]][[Category:Biology]][[Category:Assembly]] |{{#vardefine:exe|}} 

2 KB (302 words) - 13:19, 15 August 2022
Minimac
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (332 words) - 20:11, 18 August 2022
AliStat
[[Category:Software]][[Category:Phylogenetics]]

3 KB (315 words) - 20:18, 1 October 2020
Macrel
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (279 words) - 17:45, 10 May 2024
Mutmap
[[Category:Software]]

2 KB (236 words) - 16:06, 21 June 2023
Glueviz
[[Category:Software]][[Category:Phylogenetics]]

2 KB (248 words) - 17:11, 15 August 2022
MECAT
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 18:29, 18 August 2022
Conefor
[[Category:Software]][[Category:Biology]] Conefor is a software package that allows quantifying the importance of habitat areas and links f

3 KB (303 words) - 14:33, 2 May 2023
PySLURM
[[Category:Software]][[Category:Scheduler Apps]]

2 KB (235 words) - 18:29, 11 November 2022
Cutadapt
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (263 words) - 18:44, 12 August 2022
Nanopolish
[[Category:Software]][[Category:Biology]]

2 KB (237 words) - 14:38, 10 June 2022
BayesR
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (253 words) - 15:01, 10 June 2022
Gem5
[[Category:Software]][[Category:Simulation]]

3 KB (434 words) - 19:23, 10 June 2022
PurgeDups
[[Category:Software]][[Category:Phylogenetics]]

2 KB (257 words) - 18:50, 27 May 2022
Resolve
[[Category:Software]] ...tion, visual effects, motion graphics and audio post production all in one software tool.

2 KB (261 words) - 13:59, 25 July 2023
VirSieve
[[Category:Software]] [[Category:Software]]

5 KB (639 words) - 18:59, 14 December 2022
AMICO
[[Category:Software]][[Category:Imaging]][[Category:Library]][[Category:Math]]

2 KB (247 words) - 12:40, 12 August 2022
Dynare
[[Category:Software]][[Category:Math]] Dynare is a software platform for handling a wide class of economic models, in particular dynami

3 KB (382 words) - 21:20, 6 December 2019
UCSC
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|}} 

3 KB (349 words) - 20:53, 12 August 2022
Circlator
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 13:34, 15 August 2022
SST-Core
[[Category:Software]][[Category:Simulation]]

3 KB (324 words) - 21:24, 6 December 2019
ClonalFrame
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]]

3 KB (349 words) - 18:33, 12 August 2022
FlowCraft
[[Category:Software]][[Category:Phylogenetics]]

2 KB (246 words) - 14:18, 10 July 2020
KIM
[[Category:Software]][[Category:Simulation]]

3 KB (322 words) - 19:19, 15 August 2022
Shovill
[[Category:Software]]

2 KB (286 words) - 18:13, 23 August 2022
Chimera
[[Category:Software]][[Category:Biology]][[Category:Modeling]]

3 KB (296 words) - 18:27, 12 August 2022
EnergyPlus
[[Category:Software]][[Category:Simulation]]

2 KB (266 words) - 13:34, 31 July 2020
Blink
[[Category:Software]][[Category:Genomics‏‎]]

2 KB (267 words) - 13:03, 15 August 2022
Ncbi cli
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Library]]

3 KB (306 words) - 15:47, 9 June 2023
Email storage alert
[[Category:Software]]

2 KB (231 words) - 21:37, 5 July 2023
ClustalW
[[Category:Software]][[Category:Biology]][[Category:Alignment]]

2 KB (265 words) - 18:37, 12 August 2022
AltAnalyze
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...), microarray platforms (Gene 1.0, Exon 1.0, junction and 3' arrays). This software requires no advanced knowledge of bioinformatics programs or scripting or a

3 KB (398 words) - 19:14, 10 June 2022
ContaVect
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (309 words) - 20:40, 10 June 2022
Armadillo
[[Category:Software]][[Category:Library]][[Category:Compiler]][[Category:Math]]

2 KB (269 words) - 14:33, 12 August 2022
CNV-Sim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (321 words) - 17:28, 10 June 2022
Crisflash
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 22:15, 26 August 2020
Genmap
[[Category:Software]]

2 KB (256 words) - 21:20, 17 May 2023
Came
[[Category:Software]][[Category:Phylogenetics]]

3 KB (371 words) - 21:02, 6 December 2019
MultiQC
[[Category:Software]][[Category:Biology]][[Category:ChIP-Seq]]

2 KB (285 words) - 19:54, 12 August 2022
HaMStR
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (420 words) - 20:09, 12 August 2022
Qctool
[[Category:Software]][[Category:Phylogenetics]]

2 KB (244 words) - 19:12, 2 June 2022
Model Card Toolkit
[[Category:Software]]

3 KB (333 words) - 15:31, 10 July 2023
RACA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (235 words) - 19:45, 10 June 2022
Slow5tools
[[Category:Software]]

2 KB (259 words) - 17:49, 21 July 2022
Sciann
[[Category:Software]]

3 KB (307 words) - 20:09, 3 August 2023
Tellseq
[[Category:Software]][[Category:Sequencing]][[Category:Phylogenetics]] |{{#vardefine:url|https://www.universalsequencing.com/software}}

2 KB (263 words) - 20:52, 18 May 2022
NMRPipe
[[Category:Software]][[Category:Biology]] NMRPipe is an extensive software system for processing, analyzing, and exploiting NMR spectroscopic data. An

3 KB (325 words) - 15:55, 23 August 2022
Autodock-vina
[[Category:Software]]

3 KB (343 words) - 19:31, 9 November 2022
MEME
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (292 words) - 19:50, 12 August 2022
FragGeneScan
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:exe|1}} 

2 KB (232 words) - 16:48, 15 August 2022
Open3d
[[Category:Software]][[Category:Graphics]] Open3D is an open-source library that supports rapid development of software that deals with 3D data. The Open3D frontend exposes a set of carefully sel

3 KB (414 words) - 17:16, 7 July 2023
MetaSV
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (277 words) - 21:21, 6 December 2019
AMAS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 12:38, 12 August 2022
HDF4
[[Category:Software]][[Category:Library]][[Category:Data Science]] |{{#vardefine:exe|}} 

2 KB (314 words) - 18:16, 15 August 2022
Umi-tools
[[Category:Software]][[Category:Phylogenetics]]

2 KB (254 words) - 14:46, 4 September 2020
Mrtrix3tissue
[[Category:Software]][[Category:Biology]]

2 KB (255 words) - 16:51, 30 January 2023
BLASR
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (236 words) - 18:17, 12 August 2022
Asteroid
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (380 words) - 16:32, 1 February 2023
Ska2
[[Category:Software]][[Category:Alignment]][[Category:Biology]][[Category:Genomics]]

3 KB (365 words) - 20:51, 29 June 2023
MASS
[[Category:Software]][[Category:Genomics]][[Category:Biology]][[Category:Neuroscience]] Multi Atlas Skull Stripping (MASS) [ARAD2013], is a software package designed for robust and accurate brain extraction, applicable for b

2 KB (269 words) - 19:02, 10 October 2022
BERTopic
[[Category:Software]][[Category:Machine Learning]]

2 KB (283 words) - 14:00, 27 May 2022
TRIPLEC
[[Category:Software]][[Category:biology]] |{{#vardefine:url|http://www.cibiv.at/software/triplec/}}

3 KB (308 words) - 20:52, 12 August 2022
Rebaler
[[Category:Software]][[Category:Phylogenetics]]

2 KB (252 words) - 18:00, 1 June 2022
OMSV
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 17:49, 19 August 2022
Parabricks
[[Category:Software]][[Category:Phylogenetics]] ...ardefine:url|https://www.nvidia.com/en-us/docs/parabricks/quickstart-guide/software-overview/}}

4 KB (574 words) - 21:25, 14 December 2022
Hificnv
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (292 words) - 20:23, 20 March 2024
NCL
[[Category:Software]][[Category:Climate]] |{{#vardefine:exe|}} 

3 KB (329 words) - 20:05, 24 August 2022
IDR
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 15:50, 12 December 2019
Go
[[Category:Software]][[Category:Language]]

3 KB (305 words) - 19:05, 6 June 2022
AI Examples
...IT Research Computing AI Support Team maintains a suite of examples for AI software stacks on [https://github.com/UFResearchComputing/ UF Research Computing Gi

1 KB (199 words) - 17:06, 21 May 2024
SCRATCH-1D
[[Category:Software]][[Category:biology]][[Category:NGS]]

3 KB (381 words) - 20:35, 12 August 2022
SOAPdenovo
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|}} 

2 KB (314 words) - 00:05, 22 August 2022
Tmux
[[Category:Software]][[Category:Programming]]

2 KB (265 words) - 16:38, 22 August 2022
DoGFinder
[[Category:Software]][[Category:Phylogenetics]] DoGFinder software is a package that identifies DoGs and quantifies their expression levels, f

2 KB (252 words) - 21:58, 3 November 2020
Conpair
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (325 words) - 17:29, 10 June 2022
Delucs
[[Category:Software]]

3 KB (301 words) - 14:35, 15 August 2022
MHCflurry
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 16:07, 21 February 2020
LibMesh
[[Category:Software]][[Category:Math]]

2 KB (281 words) - 19:51, 15 August 2022
TDNAscan
[[Category:Software]][[Category:Phylogenetics]] TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions

2 KB (278 words) - 18:28, 7 December 2021
FGTPartitioner
[[Category:Software]] ...stry breakpoints in large genome-wide SNP datasets. Journal of Open Source Software, 5(46), 2030, https://doi.org/10.21105/joss.02030

2 KB (266 words) - 19:05, 28 June 2023
Category:Genomics
[[Category:Biology]][[Category:Software]] Genomics Software

347 members (0 subcategories, 0 files) - 15:26, 23 August 2022
QualiMap
[[Category:Software]][[Category:Biology]][[Category:Alignment‏]]

3 KB (326 words) - 19:32, 24 August 2022
TEToolkit
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (259 words) - 20:46, 12 August 2022
ATRAM
[[Category:Software]][[Category:Math]]

3 KB (350 words) - 15:23, 12 August 2022
Dlib
[[Category:Software]][[Category:Phylogenetics]] ...lkit containing machine learning algorithms and tools for creating complex software in C++ to solve real world problems. See http://dlib.net for the main proje

2 KB (269 words) - 13:11, 4 May 2020
BAM-matcher
[[Category:Software]][[Category:Phylogenetics]]

3 KB (324 words) - 21:07, 6 December 2019
IMPUTE5
[[Category:Software]] |{{#vardefine:url|https://jmarchini.org/software/#impute-5}}

3 KB (351 words) - 18:49, 15 August 2022
Satsuma
[[Category:Software]][[Category:Phylogenetics]]

3 KB (332 words) - 21:24, 6 December 2019
Fiji
[[Category:Software]][[Category:Image Processing]]

2 KB (248 words) - 16:42, 15 August 2022
Nsightsys
[[Category:Software]][[Category:Utility]][[Category:GPU]][[Category:Performance Analysis]]

2 KB (278 words) - 20:39, 24 August 2022
Picard-tools
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

6 KB (882 words) - 15:25, 27 January 2023
InterProScan
[[Category:Software]][[Category:Biology]] This interproscan software allows you to query your sequence against the InterPro databases.

3 KB (334 words) - 19:23, 12 August 2022
LoRMA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (301 words) - 14:34, 18 October 2022
Category:Audio
[[Category:Software]]

3 members (0 subcategories, 0 files) - 17:20, 3 June 2022
SHRiMP
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Genomics]] SHRiMP is a software package for aligning genomic reads against a target genome. It was primaril

2 KB (269 words) - 22:55, 21 August 2022
AGfusion
[[Category:Software]][[Category:Phylogenetics]]

2 KB (275 words) - 22:26, 26 August 2020
Clipkit
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]] ClipKIT: a multiple sequence alignment trimming software for accurate phylogenomic inference. Steenwyk et al. 2020, PLoS Biology. do

2 KB (276 words) - 13:29, 15 August 2022
AMRPlusPlus
[[Category:Software]][[Category:Phylogenetics]]

3 KB (365 words) - 21:19, 6 December 2019
HPG Computation
...open a support ticket to request RC to install the software in one of our software environments if it will be widely used. ==Using installed software==

5 KB (760 words) - 17:35, 22 April 2024
Development and Testing
...a SLURM partition (collection of hosts) for the purpose of supporting just software development. Jobs in this partition are not subject to a user's normal [[A

5 KB (842 words) - 17:26, 8 March 2023
INDELible
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|http://abacus.gene.ucl.ac.uk/software/indelible/}}

3 KB (384 words) - 13:34, 28 June 2021
CryptoMiniSat
[[Category:Software]][[Category:Math]]

3 KB (325 words) - 14:13, 15 August 2022
P53MH
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

3 KB (344 words) - 18:35, 10 June 2022
Gzip
[[Category:Software]][[Category:Compression]] |{{#vardefine:url|https://www.gnu.org/software/gzip/}}

2 KB (252 words) - 18:11, 15 August 2022
BEDOPS
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]]

3 KB (317 words) - 12:48, 15 August 2022
MMseqs2
[[Category:Software]][[Category:Phylogenetics]] ...ed in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good sca

3 KB (413 words) - 20:22, 2 October 2023
SqueezeMeta
[[Category:Software]][[Category:Phylogenetics]]

2 KB (255 words) - 15:47, 28 April 2022
Asaq
[[Category:Software]][[Category:Alignment]][[Category:Sequencing]][[Category:Phylogenetics]] Please cite the following papers if you use Armadillo in your research and/or software.

3 KB (374 words) - 15:10, 1 June 2022
BIRDS
[[Category:Software]][[Category:Imaging]][[Category:Workflow Automation]][[Category:Utility]]

2 KB (263 words) - 13:01, 15 August 2022
Dorado
[[Category:Software]][[Category:Genomics]] In order to run the software, you may need to load the modules "cuda" and "pytorch". You may need to als

3 KB (335 words) - 16:04, 22 February 2024
SRAssembler
[[Category:Software]][[Category:Phylogenetics]]

3 KB (381 words) - 15:33, 27 May 2022
RAPSearch
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (304 words) - 21:24, 6 December 2019
CLIPper
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 13:44, 15 August 2022
Ruby
[[Category:Software]][[Category:Language]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (272 words) - 18:55, 21 August 2022
RATTLE
[[Category:Software]]

2 KB (244 words) - 14:40, 28 July 2023
CARTA
[[Category:Software]][[Category:Image Processing]]

3 KB (327 words) - 19:15, 23 May 2022
Trim Galore
[[Category:Software]][[Category:Biology]][[Category:NGS]]

4 KB (512 words) - 20:52, 12 August 2022
Botorch
[[Category:Software]]

2 KB (288 words) - 18:11, 22 September 2022
DRAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (280 words) - 21:20, 6 December 2019
Ipyrad
[[Category:Software]][[Category:Phylogenetics]]

2 KB (239 words) - 19:00, 15 August 2022
ParGenes
[[Category:Software]][[Category:Phylogenetics]]

2 KB (265 words) - 13:31, 28 April 2021
Category:Annotation
[[Category:Software]]

8 members (0 subcategories, 0 files) - 19:54, 22 August 2022
Samtools
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (357 words) - 22:04, 21 August 2022
NWChem
[[Category:Software]][[Category:Chemistry]] |{{#vardefine:exe|}} 

3 KB (379 words) - 13:53, 6 June 2022
Meshroom
[[Category:Software]][[Category:Phylogenetics]] Meshroom is a free, open-source 3D Reconstruction Software based on the AliceVision Photogrammetric Computer Vision framework.

2 KB (252 words) - 22:27, 8 September 2020
Molpro
[[Category:Software]]

2 KB (277 words) - 20:01, 27 November 2023
BamBam
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://udall-lab.byu.edu/Research/Software/BamBam.aspx}}

3 KB (456 words) - 18:00, 12 August 2022
Ms-dial
[[Category:Software]][[Category:Biology]][[Category:Chemistry]]

3 KB (385 words) - 13:32, 19 August 2022
Centrifuge
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (355 words) - 21:05, 6 December 2019
Phanotate
[[Category:Software]][[Category:Genomics]]

2 KB (273 words) - 20:02, 8 November 2022
Themisto
[[Category:Software]]

3 KB (401 words) - 20:57, 3 June 2022
Taxtastic
[[Category:Software]][[Category:biology]][[Category:Genomics]]

2 KB (263 words) - 15:45, 19 August 2022
Modules Basic Usage
...the latest or the default version of the module and be able to execute the software is 'module load <application>'. For instance, if the module is called '''nc ...spective branches. E.g., if you need to load the module for the "espresso" software that was built with MVAPICH2 support using Intel Compiler version 11.1 you

5 KB (745 words) - 16:07, 13 February 2023
PAUDA
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] |{{#vardefine:url|http://ab.inf.uni-tuebingen.de/software/pauda/}}

3 KB (367 words) - 17:03, 21 August 2022
Dropseq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (242 words) - 13:29, 23 September 2020
Impg
[[Category:Software]][[Category:Alignment]][[Category:Biology]]

3 KB (392 words) - 21:22, 10 April 2024
CovNMR
[[Category:Software]][[Category:Biology]]

3 KB (350 words) - 15:55, 23 August 2022
Pbtk
[[Category:Software]][[Category:Biology]][[Category:Workflow Automation]]

2 KB (227 words) - 13:56, 7 April 2023
PHASE
[[Category:Software]][[Category:Phylogenetics]] In all cases, please specify the version of the software used, and any deviations from the default options.

2 KB (276 words) - 18:09, 21 August 2022
Mitsuba2
[[Category:Software]][[Category:Graphics]]

3 KB (302 words) - 20:45, 18 August 2022
Pyfaidx
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]]

3 KB (340 words) - 19:58, 21 August 2022
PHYling
[[Category:Software]]

3 KB (375 words) - 18:17, 3 June 2022
MuTect
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (286 words) - 16:33, 10 June 2022
Metacrast
[[Category:Software]][[Category:Phylogenetics]]

3 KB (392 words) - 17:58, 27 May 2022
Prodigal
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (237 words) - 14:37, 10 June 2022
Bowtie2
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|1}} 

3 KB (465 words) - 14:48, 14 December 2022
Pyrpipe
[[Category:Software]][[Category:Phylogenetics]]

3 KB (311 words) - 15:22, 16 March 2020
SOAPaligner
[[Category:Software]][[Category:Phylogenetics]] ...(Short Oligonucleotide Analysis Package). It is an updated version of SOAP software for short oligonucleotide alignment. The new program features in super fast

3 KB (334 words) - 21:24, 6 December 2019
CViT
[[Category:Software]][[Category:Programming]][[Category:Library]]

2 KB (294 words) - 12:09, 26 August 2022
VeryFastTree
[[Category:Software]][[Category:Phylogenetics]]

3 KB (329 words) - 21:03, 12 February 2021
RGIS
[[Category:Software]][[Category:Geospatial]] ...software. RiverGIS is not intended to replace or compete with existing GIS software. It was designed to complement existing GIS packages (like ARC/INFO) and pr

3 KB (370 words) - 20:27, 24 August 2022
Category:Modeling
[[Category:Software]] Modeling software

20 members (0 subcategories, 0 files) - 22:21, 29 February 2012
VarDictJava
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (334 words) - 17:23, 22 August 2022
MrBayes
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (314 words) - 12:28, 19 August 2022
ITK-SNAP
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] SNAP is a software application used to segment structures in 3D medical images. It provides se

3 KB (397 words) - 19:23, 12 August 2022
RiboCode
[[Category:Software]][[Category:Phylogenetics]]

2 KB (253 words) - 17:44, 20 May 2020
Dadi
[[Category:Software]][[Category:Phylogenetics]]

3 KB (350 words) - 21:21, 6 December 2019
LIBZMQ
[[Category:Software]][[Category:Library]]

2 KB (274 words) - 17:36, 31 May 2022
Booster
[[Category:Software]][[Category:Phylogenetics]]

2 KB (283 words) - 21:11, 6 December 2019
CRISPResso2
[[Category:Software]][[Category:Genomics]][[Category:Sequencing]][[Category:Biology]] CRISPResso2 is a software pipeline designed to enable rapid and intuitive interpretation of genome ed

2 KB (282 words) - 13:25, 11 October 2022
FEELnc
[[Category:Software]][[Category:Phylogenetics]]

3 KB (322 words) - 18:53, 10 July 2020
Ldsc
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

2 KB (283 words) - 13:30, 15 August 2022
RGI
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 21:24, 6 December 2019
Pbalign
[[Category:Software]][[Category:biology]]

2 KB (243 words) - 20:15, 12 August 2022
SEQuel
[[Category:Software]][[Category:NGS]][[Category:Biology]]

3 KB (382 words) - 22:39, 21 August 2022
MEGAHIT
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (367 words) - 18:31, 18 August 2022
Orange3
[[Category:Software]][[Category:Data Mining]] Orange is a component-based data mining software. It includes a range of data visualization, exploration, preprocessing and

3 KB (309 words) - 17:08, 10 June 2022
IDL
[[Category:Software]][[Category:language]][[Category:programming]][[Category:Data Science]]

2 KB (245 words) - 18:40, 15 August 2022
Tracula
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]]

3 KB (342 words) - 20:51, 12 August 2022
Ribotricer
[[Category:Software]]

2 KB (245 words) - 18:41, 2 October 2023
Happy
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (257 words) - 18:15, 15 August 2022
PhiSpy
[[Category:Software]][[Category:Phylogenetics]]

2 KB (291 words) - 21:23, 6 December 2019
Grib api
[[Category:Software]][[Category:Compiler]][[Category:Library]] |{{#vardefine:url|https://software.ecmwf.int/wiki/display/GRIB}}

2 KB (278 words) - 17:22, 15 August 2022
SomaticSeq
[[Category:Software]][[Category:Software]][[Category:Phylogenetics]]

2 KB (269 words) - 00:06, 22 August 2022
Azoo
[[Category:Software]][[Category:Phylogenetics]]

2 KB (271 words) - 15:28, 12 August 2022
Unanimity
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Compiler]]

2 KB (268 words) - 17:48, 15 August 2022
Crass
[[Category:Software]][[Category:Biology]][[Category:Assembly]]

3 KB (300 words) - 14:02, 15 August 2022
Sniffles
[[Category:Software]][[Category:Phylogenetics]]

3 KB (305 words) - 00:03, 22 August 2022
UDUNITS
[[Category:Software]][[Category:Library]][[Category:Data Science]][[Category:Math]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/udunits/}}

2 KB (279 words) - 17:17, 22 August 2022
Fastsimcoal
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |{{#vardefine:url|http://cmpg.unibe.ch/software/fastsimcoal2/}}

4 KB (481 words) - 15:25, 15 August 2022
Stylegan3
[[Category:Software]][[Category:Machine Learning]][[Category:Image Processing]] ...generative image modeling. This module provides access to the StyleGAN 3 software.

3 KB (298 words) - 16:09, 22 August 2022
CellProfiler
[[Category:Software]][[Category:Phylogenetics]] CellProfiler is free open-source software designed to enable biologists without training in computer vision or progra

8 KB (910 words) - 21:29, 21 December 2022
SuperCRUNCH
[[Category:Software]][[Category:Phylogenetics]]

4 KB (499 words) - 14:47, 11 May 2020
DeNoGAP
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]][[Category:NGS]]

2 KB (272 words) - 21:20, 6 December 2019
Tbprofiler
[[Category:Software]]

3 KB (312 words) - 21:31, 10 February 2023
SODA
[[Category:Software]]

2 KB (287 words) - 14:06, 29 March 2021
Lambda
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Phylogenetics]]

2 KB (279 words) - 21:21, 6 December 2019
Jasp
[[Category:Software]][[Category:Statistics]] JASP is a cross-platform software program which allows you to conduct statistical analyses in seconds, and wi

2 KB (289 words) - 16:14, 5 May 2022
DVGfinder
[[Category:Software]]

3 KB (319 words) - 13:59, 31 July 2023
KMOS
[[Category:Software]][[Category:Phylogenetics]]

2 KB (250 words) - 14:35, 4 September 2020
Fastq-pair
[[Category:Software]][[Category:Phylogenetics]]

2 KB (277 words) - 16:33, 27 May 2022
BRANCH
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Mapping]] BRANCH is a software that extends de novo transfrags and identifies novel transfrags with DNA co

3 KB (309 words) - 13:09, 15 August 2022
TACO
[[Category:Software]][[Category:Phylogenetics]]

2 KB (234 words) - 18:53, 1 June 2022
Pigz
[[Category:Software]][[Category:Compression]]

2 KB (245 words) - 21:23, 6 December 2019
Pbmm2
[[Category:Software]][[Category:Phylogenetics]]

3 KB (303 words) - 20:08, 31 May 2022
Fastix
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (249 words) - 19:38, 10 May 2021
Vcfanno
[[Category:Software]][[Category:biology]][[Category:phylogenetics]]

2 KB (291 words) - 21:29, 6 December 2019
RAxML
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://wwwkramer.in.tum.de/exelixis/software.html}}

7 KB (1,050 words) - 21:31, 21 August 2022
Category:Climate
[[Category:Software]]

8 members (0 subcategories, 0 files) - 19:34, 24 August 2022
Mixmogam
[[Category:Software]][[Category:Phylogenetics]]

2 KB (267 words) - 22:42, 8 September 2020
Geomxngspipeline
[[Category:Software]]

3 KB (332 words) - 17:51, 29 January 2024
TotalView
[[Category:Software]][[Category:Programming]] |{{#vardefine:exe|}} 

2 KB (335 words) - 12:02, 26 August 2022
Computer Vision
This page describes the collection of Computer Vision software on HiperGator. Computer vision is a crucial field of artificial intelligenc ...ow|tensorflow]] or ngc-tensorflow''': TensorFlow is a free and open-source software library for machine learning and artificial intelligence. '''ngc-tensorFlow

4 KB (563 words) - 20:59, 21 December 2022
Wgsim
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (343 words) - 21:29, 6 December 2019
Xander
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (381 words) - 19:07, 10 June 2022
Smetana
[[Category:Software]][[Category:Phylogenetics]]

2 KB (243 words) - 18:32, 1 June 2022
Brkraw
[[Category:Software]]

2 KB (287 words) - 13:35, 24 October 2022
SRA
[[Category:Software]][[Category:Biology]][[Category:NGS]] ...trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software}}

4 KB (601 words) - 19:10, 27 November 2023
GramCluster
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]

2 KB (280 words) - 16:57, 10 June 2022
Alfred
[[Category:Software]]

3 KB (294 words) - 19:29, 14 November 2022
Nanocompore
[[Category:Software]][[Category:Biology]]

3 KB (298 words) - 20:48, 10 May 2024
ImageMagick
[[Category:Software]][[Category:Imaging]] ImageMagick® is a software suite to create, edit, compose, or convert bitmap images. It can read and w

3 KB (380 words) - 18:46, 15 August 2022
Orthograph
[[Category:Software]][[Category:Biology]]

2 KB (261 words) - 18:00, 19 August 2022
Astropy
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (266 words) - 15:18, 12 August 2022
WaveGAN
[[Category:Software]]

2 KB (274 words) - 17:55, 15 August 2022
PyRosetta
[[Category:Software]][[Category:biology]][[Category:structure]][[Category:modeling]]

2 KB (267 words) - 21:24, 6 December 2019
HTSeq
[[Category:Software]][[Category:Biology]][[Category:NGS]] |{{#vardefine:exe|1}} 

3 KB (411 words) - 19:05, 12 August 2022
Spec2nii
[[Category:Software]][[Category:Phylogenetics]]

3 KB (359 words) - 13:42, 3 June 2022
Varnorm
[[Category:Software]][[Category:Biology]]

2 KB (251 words) - 17:23, 22 August 2022
Geant4
[[Category:Software]][[Category:Physics]]

3 KB (416 words) - 19:34, 30 November 2022
VIRULIGN
[[Category:Software]][[Category:Phylogenetics]]

3 KB (304 words) - 19:53, 20 April 2020
Longshot
[[Category:Software]][[Category:Genomics]]

3 KB (352 words) - 20:04, 26 July 2023
Genewalk
[[Category:Software]][[Category:Phylogenetics]]

2 KB (274 words) - 18:30, 16 May 2023
AMP
[[Category:Software]][[Category:phylogenetics]]

2 KB (271 words) - 16:08, 6 June 2022
EDirect
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (357 words) - 14:55, 15 August 2022
CHARMM
[[Category:Software]][[Category:Chemistry]][[Category:Simulation]] |{{#vardefine:exe|1}} 

3 KB (363 words) - 13:51, 6 June 2022
DosageConvertor
[[Category:Software]][[Category:Biology]]

2 KB (252 words) - 15:04, 10 June 2022
Intel Compilers and Libraries
[[Category:Software]][[Category:Programming]][[Category:Language]][[Category:Library]][[Categor |{{#vardefine:url|https://software.intel.com/en-us/intel-parallel-studio-xe}}

5 KB (612 words) - 18:04, 27 September 2023
Mitohifi
[[Category:Software]][[Category:Genomics]][[Category:Sequencing]]

3 KB (312 words) - 17:01, 21 July 2022
PALADIN
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (361 words) - 18:31, 10 June 2022
Swarm
[[Category:Software]][[Category:Data Science]]

2 KB (296 words) - 16:49, 21 August 2022
Radorgminer
[[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:Genomics]]

3 KB (297 words) - 21:55, 6 July 2022
Jutils
[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]

3 KB (345 words) - 13:30, 15 August 2022
HelitronScanner
[[Category:Software]][[Category:Phylogenetics]]

2 KB (272 words) - 21:21, 6 December 2019
GeneMark-ES
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

3 KB (303 words) - 16:44, 27 May 2022
GnuPlot
[[Category:Software]][[Category:Graphics]][[Category:Math]]

3 KB (421 words) - 17:13, 15 August 2022
Rmats2sashimiplot
[[Category:Software]][[Category:Phylogenetics]]

2 KB (240 words) - 21:56, 21 August 2022
OpenBLAS
[[Category:Software]][[Category:Programming]][[Category:Library]] ...tions for specific processor types. It is developed at the Lab of Parallel Software and Computational Science, ISCAS.

2 KB (291 words) - 18:45, 2 June 2022
Misa
[[Category:Software]][[Category:Genomics]][[Category:Biology]]

2 KB (253 words) - 19:52, 12 August 2022
3d-dna
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

3 KB (328 words) - 17:51, 10 June 2022
CRISPRanalyzer
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

3 KB (294 words) - 14:12, 15 August 2022
Amptorch
[[Category:Software]][[Category:Phylogenetics]]

3 KB (295 words) - 19:11, 5 April 2022
Circleator
[[Category:Software]][[Category:Phylogenetics]]

3 KB (319 words) - 21:18, 6 December 2019
IM and IMa
[[Category:Software]][[Category:Biology]][[Category:Genomics]] |{{#vardefine:url|http://genfaculty.rutgers.edu/hey/software}}

2 KB (299 words) - 18:44, 15 August 2022
NetCDF
[[Category:Software]][[Category:Data Science]] |{{#vardefine:url|http://www.unidata.ucar.edu/software/netcdf/}}

3 KB (402 words) - 14:56, 12 March 2024
TRUST4
[[Category:Software]][[Category:Phylogenetics]]

3 KB (314 words) - 20:12, 8 February 2021
Xerces
[[Category:Software]][[Category:phylogenetics]]

3 KB (306 words) - 21:29, 6 December 2019
ScaLAPACK
[[Category:Software]][[Category: Programming]][[Category: Library]]

2 KB (273 words) - 19:40, 21 July 2022
Nipype
[[Category:Software]][[Category:Neuroscience]][[Category:Biology]][[Category:Imaging]] neuroimaging software and facilitates interaction between these packages

3 KB (348 words) - 20:07, 12 August 2022
GOMAP
[[Category:Software]][[Category:Biology]]

2 KB (263 words) - 17:17, 15 August 2022
Bactopia
[[Category:Software]][[Category:Genomics]]

2 KB (292 words) - 21:38, 10 January 2023
MIA
[[Category:Software]][[Category:Biology]][[Category:NGS]]

3 KB (347 words) - 19:52, 12 August 2022
Hgraph2graph
[[Category:Software]] The scripts for this software should be execytes using the path from the HPC_HGRAPH2GRAPH_BIN environment

2 KB (279 words) - 17:06, 14 June 2022
MODELLER
[[Category:Software]][[Category:Biology]][[Category:Modeling]][[Category:Structure]]

3 KB (364 words) - 19:53, 12 August 2022
GeNomad
[[Category:Software]][[Category:Biology]][[Category: genomics]]

3 KB (332 words) - 13:25, 7 April 2023
Wengan
[[Category:Software]]

4 KB (472 words) - 20:55, 12 August 2022
Vcf-validator
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (249 words) - 17:27, 22 August 2022
NCO
[[Category:Software]][[Category:Data Science]] |{{#vardefine:exe|}} 

3 KB (386 words) - 14:41, 19 August 2022
Cytoscape
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Phylogenetics]] Cytoscape is an open source software platform for visualizing molecular interaction networks and biological path

3 KB (334 words) - 14:23, 15 August 2022
Ugtm
[[Category:Software]][[Category:Statistics]][[Category:Modeling]]

2 KB (247 words) - 16:58, 6 June 2022
CuOpt
[[Category:Software]][[Category:Biology]][[Category:Documentation]] This module enables the use of the cuOpt software

2 KB (281 words) - 19:20, 27 January 2023
Nvidia CUDA Toolkit
[[Category:Software]][[Category:Programming]][[Category:Library]][[Category:Graphics]][[Categor ...cs processing unit (GPU). With millions of CUDA-enabled GPUs sold to date, software developers, scientists and researchers are finding broad-ranging uses for G

4 KB (543 words) - 13:44, 20 November 2023
READemption
[[Category:Software]][[Category:Phylogenetics]]

3 KB (352 words) - 17:58, 1 June 2022
DiCal2
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (245 words) - 21:21, 6 December 2019
AlleleCount
[[Category:Software]][[Category:Biology]]

2 KB (243 words) - 15:34, 12 December 2022
Clara
[[Category:Software]][[Category:Machine Learning]]

3 KB (362 words) - 13:39, 15 August 2022
Trelis
[[Category:Software]][[Category:Math]] ...for complex FEA and CFD simulation. It is based on the time-proven CUBIT™ software from Sandia National Laboratories. For more than two decades, csimsoft and

2 KB (291 words) - 17:05, 22 August 2022
Category:Galaxy
[[Category:Software]]

8 members (0 subcategories, 0 files) - 18:03, 7 July 2017
TreePL
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...h provides performance comparable with or better than that of the existing software including r8s, PATHd8 and BEAST.

3 KB (316 words) - 20:51, 12 August 2022
Bruker2nifti
[[Category:Software]][[Category:Phylogenetics]] ...s converter from Bruker ParaVision to Nifti format, Journal of Open Source Software, 2(16), 354, doi:10.21105/joss.00354]

3 KB (300 words) - 15:31, 3 June 2022
Fanc
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]]

2 KB (281 words) - 15:56, 22 March 2024
Subversion
[[Category:Software]][[Category:Revision Control]]

2 KB (277 words) - 20:07, 10 June 2022
Topd
[[Category:Software]][[Category:Phylogenetics]] ...'''Split, Quartets & Triplets''', and '''Disagree'''. Each option of this software is also complemented with a random analysis to test the null hypothesis tha

3 KB (439 words) - 21:24, 31 August 2023
Erpin
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] |{{#vardefine:url|http://rna.igmors.u-psud.fr/Software/erpin.php}}

3 KB (377 words) - 21:21, 6 December 2019
Orthofisher
[[Category:Software]]

2 KB (264 words) - 15:04, 19 August 2022
Scons
[[Category:Software]][[Category:Programming]] ...on scripts. This gives SCons many powerful capabilities not found in other software build tools.

2 KB (293 words) - 21:24, 6 December 2019
Cufflinks
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

2 KB (307 words) - 14:17, 15 August 2022
Genome STRiP
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] |{{#vardefine:url|http://www.broadinstitute.org/software/genomestrip/}}

3 KB (446 words) - 19:28, 10 June 2022
Edyeet
[[Category:Software]][[Category:Phylogenetics]]

2 KB (289 words) - 19:43, 4 November 2020
WHAMM
[[Category:Software]][[Category:Biology]][[Category:Phylogenetics]]

2 KB (298 words) - 17:42, 22 August 2022
OpenCV
[[Category:Software]][[Category:Library]]

2 KB (283 words) - 21:31, 6 December 2019
MafFilter
[[Category:Software]][[Category:Phylogenetics]]

3 KB (309 words) - 17:01, 24 February 2020
CisTEM
[[Category:Software]][[Category:Phylogenetics]] |{{#vardefine:url|https://cistem.org/software}}

3 KB (349 words) - 13:35, 15 August 2022
Varpipe-wgs
[[Category:Software]][[Category:Sequqncing]][[Category:Biology]]

2 KB (261 words) - 16:22, 15 March 2023
OpenMPI
[[Category:Software]][[Category:Programming]][[Category:Library]] ...the best MPI library available. Open MPI offers advantages for system and software vendors, application developers and computer science researchers.

3 KB (337 words) - 19:02, 21 July 2023
SeqPrep
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] |{{#vardefine:exe|}} 

3 KB (371 words) - 22:38, 21 August 2022
MutSig
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (262 words) - 15:08, 10 June 2022
Je
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (242 words) - 14:44, 10 June 2022
TESS
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Math]]

3 KB (296 words) - 16:26, 22 August 2022
SortaDate
[[Category:Software]][[Category:Phylogenetics]]

3 KB (317 words) - 13:42, 4 May 2020
Rust
[[Category:Software]][[Category:Programming]]

2 KB (285 words) - 21:24, 6 December 2019
Haplomerger2
[[Category:Software]][[Category:Biology]][[Category:Genomics]] ...onsists of a set of executables as well as wrappers for several third-part software.

3 KB (339 words) - 19:05, 12 August 2022
AntiSMASH
[[Category:Software]][[Category:Phylogenetics]]

3 KB (409 words) - 21:11, 6 December 2019
P7zip
[[Category:Software]][[Category:Utility]]

2 KB (254 words) - 17:34, 15 August 2022
MATS
[[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:RNA-Seq]]

3 KB (332 words) - 18:25, 18 August 2022
Piggy
[[Category:Software]][[Category:Biology]][[Category:NGS]]

2 KB (271 words) - 20:23, 12 August 2022
PHYUTILITY
[[Category:Software]][[Category:biology]]

2 KB (296 words) - 20:22, 12 August 2022
Silo
[[Category:Software]][[Category:Library]]

3 KB (356 words) - 17:28, 10 June 2022
CASM
[[Category:Software]][[Category:Physics]] CASM is an open source software package designed to perform first-principles statistical mechanical studies

4 KB (453 words) - 13:20, 15 August 2022
PhyloPhlAn2
[[Category:Software]][[Category: Phylogenetics]] ...different phylogenetic analysis) where the user can specify the preferred software to be used to perform each step of the pipeline. In addition, several param

3 KB (375 words) - 17:57, 9 June 2022
Libvips
[[Category:Software]][[Category:Image Processing]]

2 KB (255 words) - 20:10, 26 May 2022
Blast2GO CLI
[[Category:Software]][[Category:Biology]][[Category:Genomics]]

2 KB (282 words) - 20:19, 24 August 2022
ALFA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (301 words) - 21:33, 26 August 2020
Hmmer2go
[[Category:Software]][[Category:Phylogenetics]][[Category:Biology]]

2 KB (280 words) - 18:18, 15 August 2022
Seekdeep
[[Category:Software]]

2 KB (281 words) - 17:03, 24 July 2023
NetLogo
[[Category:Software]][[Category:modeling]]

2 KB (276 words) - 21:22, 6 December 2019
Matlab add-ons
[[Category:Software]]

2 KB (206 words) - 14:11, 30 June 2017
SpeedSeq
[[Category:Software]][[Category:Phylogenetics]]

2 KB (245 words) - 22:29, 9 December 2020
MANTA
[[Category:Software]][[Category:Phylogenetics]]

3 KB (432 words) - 19:27, 10 June 2022
SMC++
[[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:Sequencing]]

2 KB (268 words) - 23:52, 21 August 2022
GUI Programs
[[Category:Software]][[Category:GUI]] ...to acknowledge an Open Source [https://xpra.org Xpra Project] for creating software we built our GUI sessions on top of.

2 KB (390 words) - 14:42, 30 January 2023
GLPK
[[Category:Software]][[Category:Programming]] |{{#vardefine:url|http://www.gnu.org/software/glpk/glpk.html}}

2 KB (272 words) - 17:11, 15 August 2022
DeepARG
[[Category:Software]][[Category:Phylogenetics]] ...software requires external data that has been removed from the web and the software has been abandoned by its author. It is not functional.

3 KB (320 words) - 21:58, 13 February 2023
RNAFramework
[[Category:Software]]

2 KB (238 words) - 21:57, 21 August 2022
Seqscreen
[[Category:Software]]

2 KB (245 words) - 14:54, 15 August 2022
LACHESIS
[[Category:Software]][[Category:Phylogenetics]] LACHESIS: A software tool to measure the thread of life.

2 KB (263 words) - 21:21, 6 December 2019
Galaxyml
[[Category:Software]][[Category:machine_Learning]]

2 KB (284 words) - 14:51, 27 January 2023

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